Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Msh6
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name mutS homolog 6
Also known as -
Coordinate chr6:11644565-11662389
Strand +
Gene summary Predicted to enable several functions, including DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to contribute to several functions, including DNA binding activity; MutLalpha complex binding activity; and adenyl ribonucleotide binding activity. Involved in mismatch repair and spermatogenesis. Predicted to be located in several cellular components, including Golgi apparatus; chromatin; and nucleoplasm. Predicted to be part of MutSalpha complex. Used to study hereditary nonpolyposis colorectal cancer type 5. Human ortholog(s) of this gene implicated in Lynch syndrome; colorectal carcinoma; endometrial cancer; hereditary nonpolyposis colorectal cancer type 5; and mismatch repair cancer syndrome. Orthologous to human MSH6 (mutS homolog 6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Msh6

Retroname Coord Strand Genomic Region ENSG
Msh6P1 chr3:55567048-55568269 - Intragenic
 N/A UCSC

Expression

Transcript Sequences

>XM_006239735.3
CGGGTGCTCGGGTCGGACGCGCCTCCTCCCGGCTTTCCCGCCAGCAGTGGCCGCGCGGCGGATGCCGTCCCTGTAGGCGCTCGGAGTGGTGGACCATTCGGCCCGTCAGCCTTCATCATGTCGCGACAAAGCACCCTATACAGCTTCTTCCCCAAGTCCCCGGCGCTCGGCGACACCAAGGAGGCCGCGGCCCGGGCCTCACGCAAAGGTGCCGCCGCCTCCGGAGCCTCCGCTTCCCGGGGCCGGGATGCGGCCTGGAGCGAGGCTGGACCTGGGTCCCGGCCCGCAGCGTTATCCACCTCGTTGCCGGAGGCAAAGGACCTTAACGGAGGGCTGCGGAGGTCGGCCGCGCCCGCGGTCCCCGCCAGTAGTTCTTGTGACTTCTCCCCAGGTGATCTGGTTTGGGCTAAGATGGAAGGTTATCCTTGGTGGCCTTGCCTGGTTTACAATCATCCCTTTGATGGGACATTCATCCGCAAGAACGGGAAATCAGCCCGTGTTCACGTACAGTTTTTTGATGACAGTCCAACAAGGGGCTGGGTTAGCAAAAGGATGTTAAAACCATATACAGGTTCAAAGTCAAAGGAAGCCCAAAAGGGAGGTCATTTCTACAGCTCAAAGTCCGAAATACTCAGAGCAATGCAGCGTGCAGACGAAGCCTTAAGTAAAGACAAGGCTCAGAGGCTTGAGCTGGCAGTCTGTGATGAGCCTTCAGAGCCggaggaggaggaggaggaggaggaggaggagACACAGGTGCATGGGGCCTATTTATCTGATAAGAGTGAAGAGGAAAATCAGGACGAGAGTGAAGAAGAAACACAGCCAAACGCTCAGGGGCCTAGGCGAAGTAGCCGGCAAGTCAAAAAGCGAAGGGTCATCTCAGACTCTGAGAGCGACATTGGCGGCTCTGATGTAGAATTCAAGCCAGACAGTAAGCAAGAAGGCAGCAGTGACGAAGTGAGCAGTGGGGTTGGAGACAGCGATAGCGAAGGCCTGGGCAGCTTTGGCAAAGGCGCTCCAAAGCGGAAGAGAACAGTGGCAGCTCATGGTGGACTTAAAAGGAAAAGTCTGAAGAAGGAAACAGGCTCAGCCAAACAAGCAACTCGCATTCTGTCAGAAACCAAGAGTACCTTGAGTGCTTTCTGTGCCCCGCAGAATTCTGAGTCCCAAACCCATGTCTGTGGAGGAGGTAACGACAGCAGTGGACCCACTATCTGGTATCATGAGACTTTAGAATGGCTTAAGCCagagaagagaagagatgagaacaggagaCGGCCAGATCACCCAGACTACAACTCCTCCACACTGTATGTGCCTGAAGACTTCCTCAACTCTTGCACCCCGGGGATGAGGCGGTGGTGGCAGTTCAAGTCTCAGAACTTTGACCTTGTCATCTTCTACAAAGTGGGCAAGTTTTATGAGTTGTATCACATGGACGCTGTCATTGGTGTCAGTGAGCTGGGACTGATATTCATGAAGGGCAACTGGGCCCACTCTGGTTTTCCAGAGATCGCATTTGGCCGATTCTCGGATTCCTTGGTGCAGAAGGGCTATAAGGTGGCCCGAGTGGAACAGACTGAGACCCCAGAGATGATGGAGGCACGGTGCCGGAAAATGGCGCATGTGTCTAAGTTTGATAGAGTGGTGAGAAGGGAGATTTGTAGGATCATTACCAAGGGCACACAGACCTATAGTGTGCTGGATGGTGATCCCTCCGAGAACTACAGTAGGTATCTTCTGAGCCTCAAAGAGAAAGAGGAAGATTCTTCTGGTCACATGCGTGCATATGGTGTGTGCTTTGTTGATACTTCACTGGGCAAGTTTTTCCTGGGCCAGTTTTCAGATGATCGCCACTGTTCCAGACTTAGGACTCTAGTGGCACACTATCCTCCAGTACAGATTTTGTTTGAGAAAGGAAATCTCTCAACAGAAACCAAAACAGTCCTGAAGGGTTACTGGTCATCTTGCCTTCAGGAAGGCCTGATTCCAGGTTCCCAATTTTGGGATGCCACTAAGACTTTGCGAACACTCCTGGAGGGAGGGTATTTTACTGGAAATGAAGGCAGTGGTGCAGAGCTGCCCCCGGTGCTTAAAGCTATGACGTCAGAGTCAGATTCTGTTGGGCTGACACCAGGAGAGGAGAGTGAGTTATCTCTGTCTGCTCTAGGTGGTTGTGTTTTCTACCTCAAAAAATGCCTGATTGATCAGGAGCTTCTGTCAATGGCTAATTTTGAAGAGTATTTTCCCTTGGATTCTGACATGGTTGGCACAGTAAAACCTGGTGCTGTCTTTACTAAAGCCAGTCAGCGAATGGTGCTAGATGCGGTGACATTAAGCAACCTGGAGATTTTCCTGAATGGGACAAATGGCTCTACTGAAGGGACTCTGCTAGAGAGGCTGGATACCTGCCATACCCCTTTTGGCAAGCGACTCTTAAAACAGTGGCTTTGTGCCCCCCTCTGTAGTCCTTCTGCTATCAGTGACCGTCTAGATGCCATTGAAGACCTGATGGCTGTGCCTGACAAAGTCGCCGAAGTTGCAGACCTCCTGAAGAAGCTGCCAGATCTTGAGAGGCTACTGAGTAAGATTCATAATGTTGGGTCTCCCCTAAAGAGCCAGAACCATCCAGATACTAGGGCTATAATGTACGAAGAAACGACATACAGCAAAAAAAAGATCATCGATTTTCTTTCTGCTCTAGAAGGATTCAAAGTAATGTGTAAAATTACAAGGCTCATGGAGGATGTCGCTGATGGGTTTAAGTCTAAAACCCTGAAGCAGGTTGTGACTCTGCAAACAAAAAGTCCTAAAGGCCGTTTTCCTGATCTGACCGCAGAACTGAACCGATGGGATACAGCTTTTGACCATGAGAAGGCTCGAAAGACTGGACTCATTACCCCAAAAGCAGGGTTTGACTCAGATTATGACCAAGCACTTGCTGACATAAGAGAGAATGAACAGAGCCTCTTGGAGTACTTAGACAAACAGCGGAGTCGGATCGGCTGTAGAAACATAGTCTACTGGGGAATTGGTAGGAACCGTTACCAGTTAGAGATTCCAGAGAATTTTGCTACCCGAAATCTACCTGAAGAATATGAGTTGAAGTCTACCAAAAAGGGCTGTAAACGATACTGGACCAAAGTGATTGAGAAGAAACTGTCTAATCTTATAAACGCTGAGGAACGCAGGGACGCATCTTTAAAGGACTGCATGCGGCGTCTGTTCTATAACTTTGACAAGAATCACAAGGACTGGCAGTCTGCTGTGGAGTGCACTGCAGTGCTGGATGTCTTACTGTGCCTGGCTAGCTATAGCCAAGGAGGAGATGGCCCGATGTGTCGCCCAGTACTTCTGTTACCAGGAGAAGACACACATCCCTTCTTAGAGCTTAAAGGCTCACGGCATCCCTGCATTACAAAGACTTTCTTTGGAGATGATTTTATTCCTAATGACATTCTGATCGGCTGTGAGGAAGACGCAGAGGCGGACGGCAAAGCCTATTGTGTGCTTGTTACTGGGCCAAATATGGGGGGCAAATCTACACTCATAAGACAGGCTGGTCTGTTAGCTGTGATGGCCCAGATGGGTTGTTATGTACCTGCCGAGCTGTGTAGGCTCACACCAGTGGATAGAGTGTTTACTCGACTTGGTGCCTCCGATAGAATCATGTCAGGGGAAAGTACATTTTTTGTTGAGTTGAGCGAAACTGCTAGCATACTCAGGCATGCGACAGCACACTCTCTGGTACTTGTGGATGAATTAGGAAGAGGGACTGCAACTTTTGATGGGACAGCAATAGCCAGTGCGGTTGTTAAAGAACTCGCTGAAACCATAAAGTGTCGAACACTGTTTTCTACACACTATCATTCATTAGTAGAGGATTATTCTAAAAATGTTTGTGTGCGCCTAGGACATATGGCATGCATGGTGGAAAATGAATGTGAGGATCCCAGCCAGGAGACCATTACTTTCCTCTATAAATTCATTAAGGGAGCTTGTCCTAAGAGCTATGGCTTTAATGCAGCAAGGCTTGCTAATCTTCCAGAGGAAGTTATTCAGAAGGGACACAGAAAAGCAAGAGAATTTGAGAGGATGAATCAGGCATTACAACTATTTCGGGAAGTTTGTCTGGCTAGTGAAAGGCCGACTGTAAACAGTGAAGCTATCCATAGGTTGCTGGCTTTGGTTAACCAATTGTAGACTACATTGGAAGCTGAGTTGACTTTTGAAAAAGGTGGTAAATTCAGACAACATTATGATCTAATAAACTTTATTTTTTAAAAATGA