Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl5
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L5
Also known as Ska23|Ska|Skax23|U21RNA
Coordinate chr5:108048388-108056871
Strand +
Gene summary Predicted to enable RNA binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in several processes, including positive regulation of aminoacyl-tRNA ligase activity; regulation of cellular protein metabolic process; and ribosome biogenesis. Located in synapse. Is expressed in several structures, including central nervous system; gonad; intestine; sensory organ; and spleen. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma. Orthologous to human RPL5 (ribosomal protein L5). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl5

Retroname Coord Strand Genomic Region ENSG
Rpl5P1 chr1:14935224-14936245 + Intergenic
ENSMUSG00000082193 UCSC
Rpl5P9 chr13:22860313-22861188 + Intergenic
ENSMUSG00000082178 UCSC
Rpl5P10 chr14:28446313-28447260 + Intergenic
ENSMUSG00000114201 UCSC
Rpl5P11 chr15:22935529-22937380 + Intragenic
ENSMUSG00000091194 UCSC
Rpl5P12 chr15:30012471-30013210 + Intergenic
ENSMUSG00000115080 UCSC
Rpl5P13 chr16:74046510-74046696 + Intragenic
ENSMUSG00000116824 UCSC
Rpl5P14 chr17:49637888-49638544 - Intergenic
ENSMUSG00000117198 UCSC
Rpl5P15 chr18:70780161-70781153 - Intergenic
ENSMUSG00000117810 UCSC
Rpl5P2 chr2:154545684-154546673 + Intergenic
ENSMUSG00000082064 UCSC
Rpl5P3 chr5:72204475-72205486 + Intragenic
ENSMUSG00000082705 UCSC
Rpl5P5 chr6:83577734-83578730 - Intergenic
ENSMUSG00000108609 UCSC
Rpl5P4 chr6:147173281-147174204 + Intergenic
ENSMUSG00000081023 UCSC
Rpl5P7 chr7:12251778-12252347 + Intragenic
ENSMUSG00000081550 UCSC
Rpl5P8 chr12:119840377-119840963 + Intergenic
ENSMUSG00000112946 UCSC
Rpl5P6 chr7:114304450-114305469 - Intergenic
ENSMUSG00000086583 UCSC

Expression

Transcript Sequences

>NM_016980.2
GTGCTGGTGGTGCTACATACTGCGCATGCGTACGTGACTCCGGTCTTTTTCCCCCTTAGCGCGGCCGACTCTGCAGGTCTGCGTGGAGCCGCGGTTGCGGGTCTCTATTCCGCAGGATGggGTTTGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTCGAAGGCGGCGAGAGGGTAAAACTGACTACTATGCTCGAAAACGATTGGTGATCCAGGACAAGAATAAGTACAACACACCCAAATATAGGATGATAGTTCGTGTAACTAACAGAGATATCATCTGCCAGATTGCATATGCCCGTATAGAAGGGGATATGATCGTCTGTGCAGCATATGCACATGAACTTCCAAAATATGGTGTGAAAGTTGGCCTGACAAATTATGCTGCAGCCTATTGCACTGGCCTGCTGCTGGCCCGCAGGCTTCTGAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGAATGGAGGTGAATACAATGTGGAAAGCATTGACGGTCAGCCTGGTGCCTTCACTTGCTATCTGGATGCAGGTCTTGCCCGAACTACAACTGGCAATAAAGTTTTTGGGGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCATAGTACCAAACGATTCCCTGGTTATGACTCTGAAAGCAAGGAGTTCAATGCAGAGGTACATCGGAAGCACATCATGGGTCAGAATGTGGCAGACTACATGCGCTACCTaatggaggaagatgaagatgcgTATAAGAAACAGTTCTCTCAGTACATCAAGAACAACGTAACTCCAGACATGatggaggagatgtataAGAAAGCTCATGCTGCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGTGGAATCGTCCCAAAATGTCTCTTGCCCAGAAGAAAGATCGGGTTGCTCAAAAGAAGGCAAGcttcctcagagctcaggaaagggCTGCTGAAAGCTAAAGCAGTTTTCTATGAAGATTTTTTCATAAAGACAATAAACATATTGATCAAGCAGCTTTTTCTGTGTTAAGCTGTTATTAATGAGACTATAGGAAATAGTGTGAAATTACAAAAGCAAAGAAGTAGAtagttatttaattaattaaattaattttacctTTTGTGTTGCACCATAACCTACCACTGGTGGGATTAAGGGCAAGTATTACCATGCCTAGCTGAGAGTCTTTCTCCAGGAAAAACCAGCTTACATGGGTTCCTGCAAATCTCATGAGTGTTTCTTGGGTTTCTAGTCTTCCTGGGAGGTGTCCTTATCTTTCAGATTTTCAGATCTGGTAATTAGCATGATCATCAGGACATTTATTACAAACAAATTGATTAGTGGGAAGAAAGTATCTCAAGGTCAATCTTGGAAGTGAACAACTGGTGCTAATCCATGGCTTTAAAGATTTGAGAACAACGGTGAAATTTGGTTTGAGGAGAAGGGGGTGTCTAGGACGTTTCATTTTTATGGTACATGCCAGACATGAATGTACATAGGAAAATAACTTGAAAGGGTCAAATATTAAACCTTGAATATCAGGTTCACTTGGGAAAGCATTAGGTGCTTATGCCTCTTAGTAAATAGCCCTTCATCCCAGAAGGAGCAAGAATTGTCTTCCTGACTTAATCCAGTCTTAGCTGAGGTGCTGTGCATCTTTATCATCTTTGCCTTGCCTCACAGTGTCAGGCTCTGTGGTACTGGGGCTACACAGGTCAGGTAAACAGTTAACTGCTTACCTACATCCCCAGCAAAGATAATGTGACGATACTAAGATGAACCTATCAGAGCTTAAAGATAATGAGTTTCAGTCACAGTGATAACTGCATGCTAACTTCAGCATGTAGAATATATGCCGAAGCTAAAAGCCATTCCACAGTTGACTCCATCTGAAGTTAAAGTGTGTAAGTACACAGTAAATCATGCTATATTAACTGAACTTTTTAATAAATGAGTCATTTGAATTTA