Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name HMGB1
Plot displaying the genomic locations of a parental gene (in scaffold_m19_p_3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Phyllostomus discolor
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_3:100238795-100241101
Strand +
Gene summary N/A

Retrocopy(s) from HMGB1

Retroname Coord Strand Genomic Region ENSG
HMGB1P1 scaffold_m19_p_2:113538367-113538740 + Intergenic
N/A UCSC
HMGB1P2 scaffold_m19_p_2:184471473-184471760 - Intergenic
N/A UCSC
HMGB1P3 scaffold_m19_p_2:79195202-79195704 - Intergenic
N/A UCSC
HMGB1P4 scaffold_m19_p_3:16699363-16699831 + Intragenic
N/A UCSC
HMGB1P5 scaffold_m19_p_3:54293739-54294330 + Intergenic
N/A UCSC
HMGB1P6 scaffold_m19_p_4:104209194-104209756 - Intergenic
N/A UCSC
HMGB1P7 scaffold_m19_p_4:80364424-80364985 + Intragenic
Intragenic
N/A UCSC
HMGB1P8 scaffold_m19_p_5:144835225-144835729 - Intergenic
N/A UCSC
HMGB1P9 scaffold_m19_p_6:121715498-121715925 - Intergenic
N/A UCSC
HMGB1P10 scaffold_m19_p_8:39280910-39281317 + Intragenic
N/A UCSC
HMGB1P11 scaffold_m19_p_8:44839920-44840537 - Intragenic
N/A UCSC
HMGB1P12 scaffold_m19_p_11:18182938-18183144 + Intergenic
N/A UCSC
HMGB1P13 scaffold_m19_p_11:83038348-83038827 - Intragenic
N/A UCSC
HMGB1P14 scaffold_m19_p_11:92999017-92999433 + Intragenic
N/A UCSC
HMGB1P15 scaffold_m19_p_12:82854124-82854761 + Intergenic
N/A UCSC
HMGB1P16 scaffold_m19_p_13:11285705-11285866 + Intergenic
N/A UCSC
HMGB1P17 scaffold_m19_p_13:68897361-68897923 - Intragenic
N/A UCSC
HMGB1P18 scaffold_m19_p_14:25061317-25061753 - Intragenic
N/A UCSC
HMGB1P19 scaffold_m19_p_14:9315859-9316350 - Intragenic
N/A UCSC
HMGB1P20 scaffold_m19_p_15:4783650-4783983 - Intergenic
N/A UCSC
HMGB1P21 scaffold_m19_p_15:49584861-49585446 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>HMGB1_x1
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCTTTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAGAAAGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATTCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGCCCCAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAGCTGGGAGAGATGTGGAACAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGAAGGAGAAATACGAAAAGGATATTGCTGCATACCGAGCTAAAGGAAAGCCTGATGCTGCAAAAAAGGGAGTTGTCAAGGCTGAaaaaagcaagaaaaagaaggaggaggaggaagatgaagaggatgaggaagatgaggaagaggaggaagacgaagaagatgaagatgaagaagaagatgatgatgatgaataa