Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name SF3B4
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name splicing factor 3b subunit 4
Also known as AFD1|Hsh49|SAP49|SF3b49
Coordinate chr1:149923317-149927803
Strand -
Gene summary This gene encodes one of four subunits of the splicing factor 3B. The protein encoded by this gene cross-links to a region in the pre-mRNA immediately upstream of the branchpoint sequence in pre-mRNA in the prespliceosomal complex A. It also may be involved in the assembly of the B, C and E spliceosomal complexes. In addition to RNA-binding activity, this protein interacts directly and highly specifically with subunit 2 of the splicing factor 3B. This protein contains two N-terminal RNA-recognition motifs (RRMs), consistent with the observation that it binds directly to pre-mRNA. [provided by RefSeq, Jul 2008]

Retrocopy(s) from SF3B4

Retroname Coord Strand Genomic Region ENSG
SF3B4P2 chr1:11761173-11762016 - Intergenic
 N/A UCSC
SF3B4P1 chr14:67199051-67200552 + Intragenic
 ENSG00000258988 UCSC

Expression

Transcript Sequences

>NM_005850.5
AGAAGGCGGAACCGCTGCTGGGAGACGGCGGGATCTCTTTCGCCATGGCTGCCGGGCCGATCTCCGAGCGGAATCAGGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACCGCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACCAAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTATGGGAAGCCAATACGGGTGAACAAAGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGGAACCTGGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCCAAAATTATGCGGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAAGCCATGAATGGGCAGTACCTCTGTAACCGTCCTATCACCGTATCTTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCATGGCTCAGCAGCCGAACGACTTCTGGCAGCTCAGAACCCGCTCTCCCAGGCTGATCGCCCTCATCAGCTGTTTGCAGATGCACCTCCTCCACCCTCTGCTCCCAATCCTGTGGTATCATCATTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCTGGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGCCCTCCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCCTCCTGGGGCTGCAGGACATGGCCCCCCATCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTCACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTTGCACACCATGGCCCTCATGGCTTAGGACATCCCCACGCTGGACCCCCAGGCTCTGGGGGCCAGCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCCTCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGCGTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCTCTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCACTTCGAGGCCCTCTCCCTCAGTAAATTCACATTTTCCTTCCTCCTGTTACATTTTCCCAATATCTTTTCTATTCCTTGGACCAATCAGAGATGCTGTAGCTCCTTGGGGCAAAGGTACTAATCCCTTTCAGCACCCCCACTCCATTCCCCTTTTTAATGTAACTTTTTCCACAGGAGGTATTTCTTTTTTATGTTGGTCCTGAGTATTTTGCAAATGCACAGAGAAAATAAAACTAAACTCCTTGTTTA