Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name HMGB1
Plot displaying the genomic locations of a parental gene (in scaffold_m29_p_3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rhinolophus ferrumequinum
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_3:4589150-4595212
Strand +
Gene summary N/A

Retrocopy(s) from HMGB1

Retroname Coord Strand Genomic Region ENSG
HMGB1P28 scaffold_m29_p_24:31516329-31516683 - Intergenic
N/A UCSC
HMGB1P16 scaffold_m29_p_13:49429943-49430958 - Intergenic
N/A UCSC
HMGB1P25 scaffold_m29_p_20:25316798-25318131 - Intergenic
N/A UCSC
HMGB1P26 scaffold_m29_p_22:26681235-26682384 - Intragenic
N/A UCSC
HMGB1P1 scaffold_m29_p_1:103565578-103568926 + Intergenic
N/A UCSC
HMGB1P2 scaffold_m29_p_1:33008880-33010194 + Intergenic
N/A UCSC
HMGB1P3 scaffold_m29_p_1:87436960-87438129 + Intergenic
N/A UCSC
HMGB1P4 scaffold_m29_p_3:5501392-5502620 + Intragenic
N/A UCSC
HMGB1P5 scaffold_m29_p_4:29127626-29128766 - Intergenic
N/A UCSC
HMGB1P6 scaffold_m29_p_5:102490994-102492149 + Intergenic
N/A UCSC
HMGB1P7 scaffold_m29_p_5:48372150-48373349 - Intragenic
N/A UCSC
HMGB1P8 scaffold_m29_p_7:59649886-59650610 - Intragenic
N/A UCSC
HMGB1P9 scaffold_m29_p_7:71646334-71647575 + Intergenic
N/A UCSC
HMGB1P10 scaffold_m29_p_7:78748490-78749554 + Intergenic
N/A UCSC
HMGB1P11 scaffold_m29_p_8:9097079-9098254 - Intragenic
N/A UCSC
HMGB1P12 scaffold_m29_p_9:76619617-76620759 + Intergenic
N/A UCSC
HMGB1P13 scaffold_m29_p_10:968930-969579 - Intergenic
N/A UCSC
HMGB1P14 scaffold_m29_p_11:48957176-48958423 + Intergenic
N/A UCSC
HMGB1P15 scaffold_m29_p_12:69196462-69197549 - Intergenic
N/A UCSC
HMGB1P18 scaffold_m29_p_14:62157506-62158989 - Intragenic
N/A UCSC
HMGB1P19 scaffold_m29_p_16:17143618-17144527 + Intergenic
N/A UCSC
HMGB1P20 scaffold_m29_p_17:48992992-48994212 + Intergenic
N/A UCSC
HMGB1P21 scaffold_m29_p_17:57099900-57100507 + Intragenic
N/A UCSC
HMGB1P22 scaffold_m29_p_19:17685847-17686373 + Intergenic
N/A UCSC
HMGB1P23 scaffold_m29_p_19:24980395-24981596 - Intergenic
N/A UCSC
HMGB1P24 scaffold_m29_p_19:43551206-43552406 + Intragenic
N/A UCSC
HMGB1P27 scaffold_m29_p_22:41367336-41368024 - Intragenic
N/A UCSC
HMGB1P29 scaffold_m29_p_29:7974366-7974844 - Intergenic
N/A UCSC
HMGB1P17 scaffold_m29_p_14:53131761-53132322 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>HMGB1_x1
GCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGTCGGACGGGTACTGGGCGACTCTGTGCTCGCTGAGGAAAAATAATTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGAAAATTTGAAGACATGGCAAAGGCTGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGCCCAAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAGCTGGGGGAGATGTGGAATAACACGGCTGCAGACGACAAGCAGCCTTATGAGAAGAAGGCAGCTAAGCagaaggaagaggaggaggacgaggaagatgaagaggatgaggaagaggaggaagatgaagaagatgaagatgaagaagaagaagatgatgatgaataagTTGGTTCTAGCGCAGTTTTTTTTTCTTGTCTATAAAGCATTTAACCCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAAATTGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCCGGTCCTTGTTGGTGCACAGCACAAATTAGTTATATATGGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACAAAATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAATTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAGT
>HMGB1_x2
GGAGGCTGCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGTCGGACGGGTACTGGGCGACTCTGTGCTCGCTGAGGAAAAATAATTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGAAAATTTGAAGACATGGCAAAGGCTGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGCCCAAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAGCTGGGGGAGATGTGGAATAACACGGCTGCAGACGACAAGCAGCCTTATGAGAAGAAGGCAGCTAAGCTGAAGGAAAAATACGAAAAGGATATTGCTGCATACCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGTCAAGGCTgaaaagagcaagaagatgatgatgaataagTTGGTTCTAGCGCAGTTTTTTTTTCTTGTCTATAAAGCATTTAACCCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAAATTGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCCGGTCCTTGTTGGTGCACAGCACAAATTAGTTATATATGGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACAAAATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAATTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAGTATTGTTGTCCTTTTCATAGGTCTGAAATTTTTCTTCTTGAGGGGAAGCTAGTCCTGCTTTTGCCCGTTTTGGATCACGTGATTTATTACAGTGTTTATCTTTTCGTATAGTTAGCTGATAAAAAGCTTTTGTCTACACACCCTGCATACTCATGATGAGAGTAGGAAGAGTTGAATTGAGACAGTTTTCATCCATAACTGAACTCTAAAATGTTGATCAGTTGATATCAAATTTCACATAGCCCAGTTACATTTACAAGTAAAGAGGAACCAGTCTACTCACAGCATGGGATTATTAGAATCAAACATTTTGGAAGTCTGTCCTTGAAGGACAAATAAAGTATGTTCTAATCTTTACATGAGGACTCTACATTTTTTAACTCCCATTACCATGTAATGGCAGTTATATTTGCAGTTCCCACGTTAAAGAAGACCTGAGAATGTATCCCCAAAAGCGTGAGCTTAAAATACAAGACTGCCGTATTAAATTTTTTGTTGACGTTAGTCCTGGCAAAGGCTCTGATTAAAAAAAAAAAGTGCTGGCTGTAAATGTCTTCTGTTTATCTACATATGGATGGCTTTGGAAACTTGAGACTCCATTAAAGATATTTTTAATTAATTGGGCCAACTTTTAAAATGGTATGCAACATTCAAAATCCATTATATTTTCCTACATTGTTGTTTGCCCCTTTATAAATCAAAGCAATGAAGGAAGAAGACACTTAAACTTTGTATCTCAGTATGAATTGTCCAATTTATCTGAACTTGATTTTTCTTTACAAAACTCAAGACTCATTCATTAGGGTCATATGTTTATCTGCTTAGCCATTTAGGGAACAATTTGGCAATTTGTGGTTTTTGAGATGATCGTTCTCTTAAAGTGCCAGTGTTTTAAAATAGCGTTCTTGTAATTTTACACGCTTTTGTGATGGAGTGCTGTTTTGTTATATAATTTTGGCTTGGATTCTTTCCATTTGCATTTGTTGATGTAATTTCAGGAGGAATACTGAACATCTGAGTCCTGGATGATACTAATAAACTAATAATTGCAGAGGTTTT
>HMGB1_x3
GTTACAGAGCGGAGAGAGTGAGGAGGCTGCGTCTGGCTCCCGCTCTCACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGTCGGACGGGTACTGGGCGACTCTGTGCTCGCTGAGGAAAAATAATTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGAAAATTTGAAGACATGGCAAAGGCTGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGCCCAAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAGCTGGGGGAGATGTGGAATAACACGGCTGCAGACGACAAGCAGCCTTATGAGAAGAAGGCAGCTAAGCTGAAGGAAAAATACGAAAAGGATATTGCTGCATACCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGTCAAGGCTgaaaagagcaagaaaaagaaggaagaggaggaggacgaggaagatgaagaggatgaggaagaggaggaagatgaagaagatgaagatgaagaagaagATTTGTTTTTAAACTGTACAGTGTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTATGGGGGTTGTAAATTGGCATGGAAATTTAAAGCCGGTCCTTGTTGGTGCACAGCACAAATTAGTTATATATGGGGATGGTAGTTTTTTCATCTTCAGTTGTCTCTGATGCAGCTTATACAAAATAATTGTTGTTCTGTTAACTGAATACCACTCTGTAATTGCAAAAAAAATTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTT
>HMGB1_x4
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGAAAATTTGAAGACATGGCAAAGGCTGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGCCCAAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAGCTGGGGGAGATGTGGAATAACACGGCTGCAGACGACAAGCAGCCTTATGAGAAGAAGGCAGCTAAGCTGAAGGAAAAATACGAAAAGGATATTGCTGCATACCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGTCAAGGCTgaaaagagcaagaaaaagaaggaagaggaggaggacgaggaagatgaagaggatgaggaagaggaggaagatgaagaagatgaagatgaagaagaagaagatgatgatgaataa