Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Sptssa
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name serine palmitoyltransferase, small subunit A
Also known as 1110002B05Rik|Ssspta
Coordinate chr12:54692159-54703357
Strand -
Gene summary Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and protein localization. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be part of serine C-palmitoyltransferase complex. Is expressed in several structures, including aorta; brainstem; heart; spleen; and submandibular gland. Orthologous to human SPTSSA (serine palmitoyltransferase small subunit A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sptssa

Retroname Coord Strand Genomic Region ENSG
SptssaP1 chr12:31290712-31292008 + Intergenic
 N/A UCSC
SptssaP2 chr17:42320479-42321741 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_134054.2
GGGTGGTGGCGGGCGGGCCCCAAGGCCTGGGGCTTTAGGAGGTGAGCGGGCCGCGGGCCCGCCTGACGCTGCTACACCGCGGGAGGCGCATGGCGGGCATGGCGCTGGCGCGAGCATGGAAGCAGATGTCCTGGTTCTACTACCAGTACCTGCTGGTCACTGCGCTCTACATGCTGGAGCCCTGGGAGCGAACCGTGTTCAATTCGATGCTGGTTTCCGTGGTGGGGATGGCCCTGTACACTGGCTACGTCTTCATGCCCCAGCACATCATGGCTATTCTGCATTACTTTGAAATTGTACAGTGACGAAGATGTGACCAGGATCCAGAGGTTCCTGGGGAAGATCTGCCTTGTGAAGTTGGAATGAGACCTCATCAGATGTAAGATGTGCTACGGATGTCCACGTGACCAACCTTATAAAtacaaagactttaaaaaaaacttcatgaGTAGAACAGGAAAAATCATCCTGGCTCATGtgttgtgttctttctttttgattttaaCAGAGGCTCTTATATAGTAGCTTTTATCTATTTTAACATTGTAGTCATTTGTACTTTGATATCAGTATTTTCTTAACCTTTGTGACTGTTTCAATATTATCCAGTGAAAGCTTTTCTTAATGTAACTTTGAGTACATCTCAATTGCcttctatttttaaaacctaAGGTCATTAGTTGGGCTTTACTGTTCTTGCTATCATATGGCATATACATCTGCCTGGATATATTTCTACTCTTGACCAAAGTTTTGTAAGAAACAATACAGAATTTGGGGACGGGAGGGAGGATACTTTGAGAACTACTTACAAAAGATTTATCTGCTTGCTTGAACTCAGGAGTACGGTTTTAGCTCCCTAGACTCTTAACAGCTTTTGCTCTAAAACTATTAAAGTGTTTCTTAGTAATGAAAAAGTAAAGATCTTGCTAACATTAATACAAGGAACATTTCACCTTTTAGATATTAAATTCTTATGTGGACTTATTTCCAACCAACTTTGATGATTCCTGTGATTGGTGATTGGTGGCCGGCTTGTATGACATATGCTGAGATACACTGTGGAGCTTTTCATAGAAGGCTTATCAGATCCTCTGAGGCAGTATTGACCCTGTATACGCTCAAGAGTTAATTTGATGTTGTAACAGGCGTTGTGAAATGCATTTGCACGTTGTGATAAAGACACAATGAGATGAATTGTGCAGAACCATAACCAAAAGAAATGTAAACTTGCTTAAAAATCCTTtcactctttgtattttttttaaaacggTTTTTATTCCTTAGATGTAAaatgactacttttttttttgatgtaaactcattaaattcaaagaaaaatgtaGCAGTCTCTTTTATGGTT