Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name U2af1
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Also known as 2010107D16Rik
Coordinate chr17:31866055-31878122
Strand -
Gene summary Enables RS domain binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Located in nuclear speck. Is expressed in several structures, including genitourinary system; gut; nervous system; sensory organ; and skeleton. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from U2af1

Retroname Coord Strand Genomic Region ENSG
U2af1P1 chr7:99594223-99595010 + Intragenic
 ENSMUSG00000108823 UCSC
U2af1P2 chr17:3094158-3095044 - Intergenic
 ENSMUSG00000068141 UCSC
U2af1P3 chr18:64744675-64745569 - Intragenic
Intragenic
 ENSMUSG00000118133 UCSC

Expression

Transcript Sequences

>NM_001163769.1
GAGGGACGTCGGCGTAGTCGGCAGCGTCGGCTGCCGTGCCTGAGTCGTCCGCTCGAAAATGGCGGAATACTTGGCCTCCATCTTCGGCACCGAAAAAGACAAAGTCAactgttcattttatttcaaaatcggAGCATGTCGTCATGGAGACAGATGTTCTCGGTTGCACAATAAACCAACCTTTAGCCAGACCATCTTGATTCAAAACATCTATCGTAATCCCCAAAACAGTGCACAGACGGCTGACGGCTCACACTGTGCTGTGAGCGACGTGGAGATGCAGGAGCACTATGATGAGTTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTACGGGGAAGTCGAGGAGATGAACGTCTGCGACAACCTAGGGGACCACCTGGTGGGGAACGTGTATGTCAAGTTTCGACGTgaggaggatgcagagaaagccGTGATCGACTTGAATAACCGTTGGTTTAATGGACAGCCGATCCATGCAGAGCTGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCCGCCAGTATGAAATGGGAGAGTGCACAAGAGGGGGCTTCTGCAACTTCATGCATTTGAAGCCCATCTCAAGAGAGCTACGACGGGAGCTGTATGGGCGCCGGCGCAAGAAGCATAGATCCAGGTCCCGATCCAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACgcggtggtggaggtggaggtggaggtggcgGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACGATTCTGAGCCGAGCCCTTTTTACCGTGTGTCTGCTAGACAGTGTTGTAGTTGGTTGACAAGCCAGTTcataatgggatttttttttttaaaaaacaacaaagatgGGTTTCTGAATAAACTTTGTAGTGATACAGT
>NM_024187.4
GAGGGACGTCGGCGTAGTCGGCAGCGTCGGCTGCCGTGCCTGAGTCGTCCGCTCGAAAATGGCGGAATACTTGGCCTCCATCTTCGGCACCGAAAAAGACAAAGTCAactgttcattttatttcaaaatcggAGCATGTCGTCATGGAGACAGATGTTCTCGGTTGCACAATAAACCAACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCTGTGAGCGACGTGGAGATGCAGGAGCACTATGATGAGTTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTACGGGGAAGTCGAGGAGATGAACGTCTGCGACAACCTAGGGGACCACCTGGTGGGGAACGTGTATGTCAAGTTTCGACGTgaggaggatgcagagaaagccGTGATCGACTTGAATAACCGTTGGTTTAATGGACAGCCGATCCATGCAGAGCTGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCCGCCAGTATGAAATGGGAGAGTGCACAAGAGGGGGCTTCTGCAACTTCATGCATTTGAAGCCCATCTCAAGAGAGCTACGACGGGAGCTGTATGGGCGCCGGCGCAAGAAGCATAGATCCAGGTCCCGATCCAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACgcggtggtggaggtggaggtggaggtggcgGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACGATTCTGAGCCGAGCCCTTTTTACCGTGTGTCTGCTAGACAGTGTTGTAGTTGGTTGACAAGCCAGTTcataatgggatttttttttttaaaaaacaacaaagatgGGTTTCTGAATAAACTTTGTAGTGATACAGT