Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RNPS1
Plot displaying the genomic locations of a parental gene (in chr16) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name RNA binding protein with serine rich domain 1
Also known as E5.1
Coordinate chr16:2253116-2268126
Strand -
Gene summary This gene encodes a protein that is part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein binds to the mRNA and remains bound after nuclear export, acting as a nucleocytoplasmic shuttling protein. This protein contains many serine residues. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2013]

Retrocopy(s) from RNPS1

Retroname Coord Strand Genomic Region ENSG
RNPS1P1 chr4:11371458-11373739 + Intergenic
ENSG00000250896 UCSC

Expression

Transcript Sequences

>XM_005255049.4
atattgatgatgagaaacttgagaaaggataagtgacttgtctaaaatcacacagtaaaacctcaaatcaaacccaggccctctggctccagactcTAAATTATACTCTGAATGATACTCACTGATTGTCCGAGGACACAAAGAGTGTCGAGGCACTATCTGCTGGGTGTCTGCAGAACCTTACTGTTCTAAAGCAAAACATTTTACCCCTGGACAAGAGCAGCAAAGGTGGCGTTCGGCCCTCCTTGGCTCTCATTTGACTGTTCAAAGCCAGGTGCTTTTCTTTCTTGGGTCAGAACGTATTTTCAGCAGCATTTTGAAGCACCCCTGGCGTGCACTGCACAGGGAAACCAGGACCACATTGGTGTGCTGTGTCCTCCTTACCAACTGGCTCTTGGAGAAGGCTGCTCTTTGGCGTAAATTGCAATCGATTAGGGATCGTTTCTCAGAATCAAGTTAGAAGTGAGAGTTCAGATAAGTGAGGCCGCCATTGCTGCTTTGAACACCTCAGAAGGGGAGAATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTCACCTACCAAACGCAAAGACCGCTCAGATGAGAAGTCCAAGGATCGCTCAAAAGATAAAGGGGCCACCAAGGAGTCGAGTGAGAAGGATCGCGGCCGGGACAAAACCCGAAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGTACCAGGTCTCGGTCCAGCTCGACTTCCAGCTCAGGCTCCAGCACCAGCACTGGCTCAAGCAGTGGCTCCAGCTCTTCCTCAGCATCCAGCCGCTCAGGAAGCTCCAGCACCTCCCGCAGCTCCAGCTCTAGCAGCTCTTCTGGCTCTCCAAGTCCTTCTCGGCGCAGACACGACAACAGGAGGCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAAAGGCGGAGCCCATCTCCTAAGCCCACCAAAGTGCACATTGGGAGACTCACCCGGAATGTGACAAAGGATCACATCATGGAGATATTTTCCACCTATGGGAAAATTAAAATGATTGACATGCCCGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCGTACGTAGAGTTTGAGAATCCAGATGAAGCCGAGAAGGCGCTGAAGCACATGGATGGAGGACAAATTGATGGCCAGGAGATCACTGCCACCGCCGTGCTGGCCCCCTGGCCTAGGCCACCCCCCAGGAGATTCAGCCCTCCCAGGAGAATGTTGCCACCACCGCCTATGTGGCGCAGGTCTCCCCCACGGATGAGGAGAAGGTCCCGCTCCCCGAGGCGCAGGTCCCCCGTGCGCCGGAGATCACGGTCCCCGGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTCCTCCCGATAAACAGGCCACTGAAGCTCTCGCCCCTGTAACTTATACCCCACCCAGCTCAGTTTTGTCACTTTTCTAGCCAAAGGAAGACCAGTAGGAAAGCAAACCCTTGACTCTGGCAGGATTTGCAGGCAGCAGGCAGCACCCCTCTGCCAGCCGGGCCCCGGCTGCAGAAGTGCTGTTGGTTTGGATGCTGTGTGCCTGTCAAGATTCCCTCCGGTTTTCTGGCTAGAAAGCTCATCCGTTTCCGGTTTCTAAGAGTCAGTTCAGTGGCAGAGCCACCAGGGAAAAGTGAGGCTCTTGGGGGTGGTTTGACCCTGCTTACCTGGGAGCACACTTTTCCCTTCCCCGATGACCTGGGATGGTGGCCAGGCCGTGCCCTTGCTGTTGCTGGGCAGTGTCCTTTTGGAAAGGGAGCTGCCCCAGGCTTTAGTGCAGCTGCCAACCCTGTTAGGCCTGGCCTCTCGAGGCCTCTTCTGACCTCAAGGGTCACACCCCCTCAAAGATCCTCTCACCCATGGTAGTTGCTGCTCGTGGTTCTGTCTGTCCGTGCACCGATGCACACACCGCACCCCACCACTGTACTCTGAAATTGGCGAGTGAGTGGAGAGCCAGCTCTGCGGAGTCATCACGCAGCCATGGTTGTGCCTGCCGTTCATGGTGGTCTTTCAGGTTATCTTGGCAACATGTACATTGCTTTTATTTTTTTTCTTTTTTGCTTTCATTGTACAGTCAGTACTATAAAATTTCTCTTTTGAGTTTTATACCTTTGTAGCATTTTAGATGACATTGTGTTTGTACTTTGTTGTGTAGAGTGGAAGAATTGTGTTGAATAAACCCAAGATCGGAATGCAAATCTA