Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Sqstm1
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name sequestosome 1
Also known as Osi|ZIP|ZIP3
Coordinate chr10:35704728-35716316
Strand -
Gene summary Enables identical protein binding activity and protein kinase C binding activity. Involved in positive regulation of protein phosphorylation and response to ischemia. Located in Lewy body and mitochondrion. Biomarker of glaucoma and hypertension. Human ortholog(s) of this gene implicated in GNE myopathy; Paget's disease of bone; and frontotemporal dementia and/or amyotrophic lateral sclerosis-3. Orthologous to human SQSTM1 (sequestosome 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sqstm1

Retroname Coord Strand Genomic Region ENSG
Sqstm1P1 chr13:93326759-93327667 - Intragenic
 N/A UCSC
Sqstm1P2 chrX:43268191-43269682 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_175843.4
GCCCAGCTGTTTCCTCCGTACCTAGTCTGCGGTTATGGCTTCGCTCACGGTGAAGGCCTATCTACTGGGCAAGGAGGAGGCGGCCCGCGAGATCCGCCGCTTCAGCTTCTGCTTCAGCccggagccggaggcggaagccgcggctggcccggggccCTGCGAGAGGCTGCTGAGCCGGGTGGCTGTGCTGTTCCCCGCGCTGCGGCCTGGAGGCTTTCAGGCGCACTACCGCGATGAGGATGGGGACTTGGTCGCCTTCTCCAGTGATGAGGAACTGACAATGGCCATGTCCTATGTGAAAGATGACATCTTCCGCATCTACATTAAAGAGAAGAAGGAGTGCCGGCGGGAACATCGCCCCCCATGTGCTCAGGAGGCACGAAGCATGGTGCACCCCAACGTGATTTGTGATGGTTGCAATGGGCCTGTGGTGGGAACTCGCTATAAGTGCAGTGTGTGCCCCGACTACGACCTGTGCAGCGTCTGCGAGGGGAAGGGCCTGCACAGGGAGCACAGCAAGCTCATCTTTCCCAACCCCTTTGGCCACCTCTCTGATAGCTTCTCTCATAGCCGCTGGCTTCGGAAGCTGAAACATGGGCACTTTGGCTGGCCTGGCTGGGAGATGGGCCCACCAGGGAACTGGAGCCCACGTCCTCCTCGCGCAGGGGATGGTCGCCCTTGCCCCACAGCTGAGTCGGCTTCTGCTCCATCAGAGGATCCCAATGTCAATTTCCTGAAGAATGTGGGGGAGAGCGTGGCAGCTGCCCTCAGCCCTCTAGGCATCGAGGTTGACATTGATGTGGAACATGGAGGGAAGAGAAGCCGCCTGACACCCACCTCTGCAGAAAGTTCCAGCACAGGCACAGAAGATAAGAGTGGTACTCAGCCAAGCAGCTGCTCTTCGGAAGTCAGCAAACCTGACGGGGCCGGGGAGGGCCCTGCTCAGTCTCTGACAGAGCAGATGAAGAAGATAGCCTTGGAGTCGGTGGGACAGCCAGAGGAACTGATGGAGTCGGATAACTGCTCAGGAGGGGATGACGACTGGACGCATTTGTCTTCTAAAGAAGTGGACCCATCCACAGGTGAACTCCAGTCTCTACAGATGCCAGAATCGGAAGGGCCAAGCTCTCTAGACCCCTCACAGGAAGGCCCCACAGGGCTGAAGGAAGCTGCCCTGTACCCACATCTCCCACCAGAGGCTGATCCCCGGCTGATTGAGTCACTCTCTCAGATGCTGTCCATGGGTTTCTCGGATGAAGGCGGCTGGCTCACCAGGCTCCTACAGACCAAGAATTATGACATCGGGGCTGCTCTGGACACGATCCAGTATTCAAAGCACCCTCCACCATTGTGACAGTGCTGTGGCCAAGTCCCACAACCCACCTCCCTTGTCTTCTAGTTGCATCATGTAGAGTAGCAGGGCTTCTAAGGCCCAGTGTCTTGGCATTCTTCTAGAACCTTCAGGTGGGACTGTGAGGCCTTCTTAGGCAGTAGGAAAGTGCATGAGAAGAGAGTCTGAGTGTGCACATGCTGACCCCTGAGCACAGATCCAAGCAGCTGTGGCTGGGCTTCCGCTGCTTTCCCTCGGCCTGGCCTTTGCCAGGGAGCTGTGGAGTCATGCTGCACTCCACTTGCTCTTGCCGCCAGCATTGCACCTGCAGTCCATCATCCCTGCCTGATAACCTTCTGTGTTTTCTTTATTAAAAGGGATTAGTACAACTGATAGTTATTTTCAACAAATAAAGCCATTATGTTTAGAGGGGGACTGTCCTCAGTGAGTGAAAGGTGGCAGGCTACCGGGGCCTACGGCTCCTGGGTGATGGAGAACTTAGGTGAAGCCAACTGAAAGATCTTATCATTCACTGTGCCCCCTTTTAATGGCCAGTTTAGTTTTTGTGTCTAATGTTAATGCTTAAAGTACAAACCCCCTATGTAGCTTCCTCTGACTTGATTTTTAAGTAACCTGTAATAAAGTGGCATATGCACTTTAA
>XM_006246213.2
CTGGGCTCTCGGAGCCGCCGCTGCCCAGCTGTTTCCTCCGTACCTAGTCTGCGGTTATGGCTTCGCTCACGGTGAAGGCCTATCTACTGGGCAAGGAGGAGGCGGCCCGCGAGATCCGCCGCTTCAGCTTCTGCTTCAGCccggagccggaggcggaagccgcggctggcccggggccCTGCGAGAGGCTGCTGAGCCGGGTGGCTGTGCTGTTCCCCGCGCTGCGGCCTGGAGGCTTTCAGGCGCACTACCGCGATGAGGATGGGGACTTGGTCGCCTTCTCCAGTGATGAGGAACTGACAATGGCCATGTCCTATGTGAAAGATGACATCTTCCGCATCTACATTAAAGAGAAGAAGGAGTGCCGGCGGGAACATCGCCCCCCATGTGCTCAGGAGGCACGAAGCATGGTGCACCCCAACGTGATTTGTGATGGTTGCAATGGGCCTGTGGTGGGAACTCGCTATAAGTGCAGTGTGTGCCCCGACTACGACCTGTGCAGCGTCTGCGAGGGGAAGGGCCTGCACAGGGAGCACAGCAAGCTCATCTTTCCCAACCCCTTTGGCCACCTCTCTGATAGCTTCTCTCATAGCCGCTGGCTTCGGAAGCTGAAACATGGGCACTTTGGCTGGCCTGGCTGGGAGATGGGCCCACCAGGGAACTGGAGCCCACGTCCTCCTCGCGCAGGGGATGGTCGCCCTTGCCCCACAGCTGAGTCGGGCATCGAGGTTGACATTGATGTGGAACATGGAGGGAAGAGAAGCCGCCTGACACCCACCTCTGCAGAAAGTTCCAGCACAGGCACAGAAGATAAGAGTGGTACTCAGCCAAGCAGCTGCTCTTCGGAAGTCAGCAAACCTGACGGGGCCGGGGAGGGCCCTGCTCAGTCTCTGACAGAGCAGATGAAGAAGATAGCCTTGGAGTCGGTGGGACAGCCAGAGGAACTGATGGAGTCGGATAACTGCTCAGGAGGGGATGACGACTGGACGCATTTGTCTTCTAAAGAAGTGGACCCATCCACAGGTGAACTCCAGTCTCTACAGATGCCAGAATCGGAAGGGCCAAGCTCTCTAGACCCCTCACAGGAAGGCCCCACAGGGCTGAAGGAAGCTGCCCTGTACCCACATCTCCCACCAGAGGCTGATCCCCGGCTGATTGAGTCACTCTCTCAGATGCTGTCCATGGGTTTCTCGGATGAAGGCGGCTGGCTCACCAGGCTCCTACAGACCAAGAATTATGACATCGGGGCTGCTCTGGACACGATCCAGTATTCAAAGCACCCTCCACCATTGTGACAGTGCTGTGGCCAAGTCCCACAACCCACCTCCCTTGTCTTCTAGTTGCATCATGTAGAGTAGCAGGGCTTCTAAGGCCCAGTGTCTTGGCATTCTTCTAGAACCTTCAGGTGGGACTGTGAGGCCTTCTTAGGCAGTAGGAAAGTGCATGAGAAGAGAGTCTGAGTGTGCACATGCTGACCCCTGAGCACAGATCCAAGCAGCTGTGGCTGGGCTTCCGCTGCTTTCCCTCGGCCTGGCCTTTGCCAGGGAGCTGTGGAGTCATGCTGCACTCCACTTGCTCTTGCCGCCAGCATTGCACCTGCAGTCCATCATCCCTGCCTGATAACCTTCTGTGTTTTCTTTATTAAAAGGGATTAGTACAACTGATAGTTATTTTCAACAAATAAAGCCATTATGTTTAGAGGGGGACTGTCCTCAGTGAGTGAAAGGTGGCAGGCTACCGGGGCCTACGGCTCCTGGGTGATGGAGAACTTAGGTGAAGCCAACTGAAAGATCTTATCATTCACTGTGCCCCCTTTTAATGGCCAGTTTAGTTTTTGTGTCTAATGTTAATGCTTAAAGTACAAACCCCCTATGTAGCTTCCTCTGACTTGATTTTTAAGTAACCTGTAATAAAGTGGCATATGCACTTTAA