Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Actb
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name actin, beta
Also known as Actx|E430023M04Rik|beta-actin
Coordinate chr5:142888870-142892509
Strand -
Gene summary This gene encodes a member of the actin family of proteins. Actins are highly conserved proteins that are among the most abundant proteins in eukaryotic cells and are involved in cell motility, structure, and integrity. Localization, stability, and translation of the transcribed mRNA are regulated through the binding of multiple factors to its 3' UTR sequence. Homozygous knockout mice for this gene exhibit embryonic lethality. Numerous pseudogenes of this gene have been identified in the mouse genome. [provided by RefSeq, Sep 2015]

Retrocopy(s) from Actb

Retroname Coord Strand Genomic Region ENSG
ActbP3 chr12:62111923-62112346 - Intergenic
ENSMUSG00000113144 UCSC
ActbP5 chr17:8784588-8785801 - Intragenic
ENSMUSG00000099104 UCSC
ActbP6 chr18:31653422-31653639 - Intergenic
ENSMUSG00000117576 UCSC
ActbP2 chr9:65272322-65272494 + Intragenic
ENSMUSG00000111092 UCSC
ActbP14 chrX:4415486-4415685 + Intragenic
ENSMUSG00000094323 UCSC
ActbP15 chrX:5577569-5578108 + Intergenic
ENSMUSG00000082270 UCSC
ActbP13 chrX:38201603-38202153 - Intergenic
ENSMUSG00000084030 UCSC
ActbP7 chrX:141966363-141967505 - Intragenic
ENSMUSG00000083089 UCSC
ActbP8 chrX:144878700-144879526 + Intergenic
ENSMUSG00000083960 UCSC
ActbP4 chr16:37702945-37704617 + Intragenic
ENSMUSG00000083405 UCSC
ActbP9 chrX:151215794-151216996 + Intragenic
ENSMUSG00000087235 UCSC
ActbP1 chr2:113880780-113881097 - Intragenic
N/A UCSC
ActbP10 chrX:3073306-3073659 + Intergenic
N/A UCSC
ActbP11 chrX:31170376-31170764 - Intergenic
N/A UCSC
ActbP12 chrX:32747361-32747553 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_007393.5
TATAAAACCCGGCGGCGCAACGCGCAGCCACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCTTTGCAGCTCCTTCGTTGCCGGTCCACACCCGCCACCAGTTCGCCATGGATGACGATATCGCTGCGCTGGTCGTCGACAACGGCTCCGGCATGTGCAAAGCCGGCTTCGCGGGCGACGATGCTCCCCGGGCTGTATTCCCCTCCATCGTGGGCCGCCCTAGGCACCAGGGTGTGATGGTGGGAATGGGTCAGAAGGACTCCTATGTGGGTGACGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATTGAACATGGCATTGTTACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCACCCTGTGCTGCTCACCGAGGCCCCCCTGAACCCTAAGGCCAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACAGGCATTGTGATGGACTCCGGAGACGGGGTCACCCACACTGTGCCCATCTACGAGGGCTATGCTCTCCCTCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATCGTGCGTGACATCAAAGAGAAGCTGTGCTATGTTGCTCTAGACTTCGAGCAGGAGATGGCCACTGCCGCATCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGCCAGGTCATCACTATTGGCAACGAGCGGTTCCGATGCCCTGAGGCTCTTTTCCAGCCTTCCTTCTTGGGTATGGAATCCTGTGGCATCCATGAAACTACATTCAATTCCATCATGAAGTGTGACGTTGACATCCGTAAAGACCTCTATGCCAACACAGTGCTGTCTGGTGGTACCACCATGTACCCAGGCATTGCTGACAGGATGCAGAAGGAGATTACTGCTCTGGCTCCTAGCACCATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCTGTGTGGATCGGTGGCTCCATCCTGGCCTCACTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAGTCCGGCCCCTCCATCGTGCACCGCAAGTGCTTCTAGGCGGACTGTTACTGAGCTGCGTTTTACACCCTTTCTTTGACAAAACCTAACTTgcgcagaaaaaaaaaaaataagagacaacattggcatggctttgtttttttaaattttttttaaagtttttttttttttttttttttttttttttaagtttttttgttttgttttggcgcTTTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGCGACAGCAGTTGGTTGGAGCAAACATCCCCCAAAGTTCTACAAATGTGGCTGAGGACTTtgtacattgttttgtttttttttttttttggttttgtctttttttaatagTCATTCCAAGTATCCATGAAATAAGTGGTTACAGGAAGTCCCTCACCCTCCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGGTGACAGCATTGCTTCTGTGTAAATTATGTACtgcaaaaatttttttaaatcttccgcCTTaatacttcatttttgtttttaatttctgaatgGCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGAAGGCTTTGGTCTCCCTGGGAGGGGGTTGAGGTGTTGAGGCAGCCAGGGCTGGCCTGTACACTGACTTGAGACCAATAAAAGTGCACACCTTACCTTACACAAACA