Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl6
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ribosomal protein L6
Also known as -
Coordinate chr12:40877578-40882032
Strand -
Gene summary Enables 5.8S rRNA binding activity; mRNA binding activity; and tRNA binding activity. Predicted to be involved in cytoplasmic translation and ribosomal large subunit assembly. Located in A band. Part of cytosolic large ribosomal subunit. Orthologous to human RPL6 (ribosomal protein L6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl6

Retroname Coord Strand Genomic Region ENSG
Rpl6P1 chr1:112278038-112278488 - Intragenic
N/A UCSC
Rpl6P2 chr1:227414676-227415425 + Intragenic
N/A UCSC
Rpl6P3 chr2:6130350-6131478 + Intergenic
N/A UCSC
Rpl6P5 chr3:127560733-127561342 + Intragenic
N/A UCSC
Rpl6P7 chr4:107442910-107443707 - Intergenic
N/A UCSC
Rpl6P10 chr7:85928919-85929135 + Intergenic
N/A UCSC
Rpl6P11 chr8:114809603-114810168 - Intergenic
N/A UCSC
Rpl6P12 chr9:64199065-64199802 - Intergenic
N/A UCSC
Rpl6P13 chr10:103611509-103612169 + Intragenic
N/A UCSC
Rpl6P14 chr13:91300698-91301036 + Intergenic
N/A UCSC
Rpl6P17 chr16:15157755-15157970 - Intergenic
N/A UCSC
Rpl6P20 chr18:9856392-9857147 - Intergenic
N/A UCSC
Rpl6P4 chr2:69170596-69171211 - Intergenic
N/A UCSC
Rpl6P6 chr3:95306953-95307916 - Intergenic
N/A UCSC
Rpl6P8 chr6:128738372-128739325 + Intergenic
N/A UCSC
Rpl6P9 chr7:37145203-37146116 + Intragenic
N/A UCSC
Rpl6P15 chr15:39656898-39657843 - Intragenic
Intragenic
Intragenic
N/A UCSC
Rpl6P16 chr15:43864264-43865213 + Intergenic
N/A UCSC
Rpl6P18 chr17:14686518-14687478 - Intergenic
N/A UCSC
Rpl6P19 chr17:15526306-15527266 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_053971.3
AGATGGCGGGTGAAAAGGCGGAGAAGCCTGATAAAAAGGAGCAGAAACCTGCAGCCAAGAAGGCTGGCGGTGATGCTACTGCCCCCCGGGCCCTGCCCGCTGGTGCGGTCAAAAAGAGTAGTTCTAAGGCTAAAAAGCTGAGGAAGAGTAAGCCCCATTGCAGCCGGAACCCTGTCCTGGTGAGAGGAATCGGCAGGTATTCCCGATCTGCTATGTATTCCAGAAAGGCCTTGTACAAAAGGAAATACTCTGCTGCCAAGACAAAGGTTGagaagaagaagaagaaagaaaagGTCCTTGCTACCGTCACAAAAACAGTTGGTGGGGACAAGAACGGTGGCACCCGGGTGGTGAAGCTTCGAAAAATGCCTAGGTATTACCCTACTGAAGACGTGCCTCGGAAGCTGCTGAGCCACGGCAAGAAGCCCTTCAGCCAGCACGTGAGGAGGCTGCGCTCCAGCATCACTCCCGGGACTGTCCTGATCATCCTCACTGGGCGCCACAGGGGCAAGAGAGTGGTTTTCCTCAAGCAGCTGGGCAGTGGCTTGCTACTTGTGACTGGACCTCTTGCCCTCAACAGAGTTCCTCTGCGTAGGACACACCAGAAGTTTGTCATCGCCACCTCTACAAAAGTTGATATCAGCAAGGTTAAAATTCCCAAACACCTGACTGATGCTTACTTCAAGAAGAAGCCACTTCGCAAGCCCAGGCATCAGGAGGGTGAGATCTTCGACACAGAGAAGGAGAAATACGAAATTACAGAGCAGCGAAAGGCTGATCAGAAAGCTGTGGACTCGCAGATTTTGCCAAAGATCAAAGCTGTCCCCCAGCTCCAGGGCTACCTGCGGTCTCAGTTCTCCCTGACGAACGGCATGTACCCTCACAAACTGGTGTTCTAATTGTTAACAACCTAATTAAACTGCTTCATAAGG
>XM_006249378.3
CCGTCATTGCTTATAGACCGGAAGCCGCTGTCTTAGTCCTCTTTCCCGTCTTGCAAGATGGCGGGTGAAAAGGCGGAGAAGCCTGATAAAAAGGAGCAGAAACCTGCAGCCAAGAAGGCTGGCGGTGATGCTACTGCCCCCCGGGCCCTGCCCGCTGGTGCGGTCAAAAAGAGTAGTTCTAAGGCTAAAAAGCTGAGGAAGAGTAAGCCCCATTGCAGCCGGAACCCTGTCCTGGTGAGAGGAATCGGCAGGTATTCCCGATCTGCTATGTATTCCAGAAAGGCCTTGTACAAAAGGAAATACTCTGCTGCCAAGACAAAGGTTGagaagaagaagaagaaagaaaagGTCCTTGCTACCGTCACAAAAACAGTTGGTGGGGACAAGAACGGTGGCACCCGGGTGGTGAAGCTTCGAAAAATGCCTAGGTATTACCCTACTGAAGACGTGCCTCGGAAGCTGCTGAGCCACGGCAAGAAGCCCTTCAGCCAGCACGTGAGGAGGCTGCGCTCCAGCATCACTCCCGGGACTGTCCTGATCATCCTCACTGGGCGCCACAGGGGCAAGAGAGTGGTTTTCCTCAAGCAGCTGGGCAGTGGCTTGCTACTTGTGACTGGACCTCTTGCCCTCAACAGAGTTCCTCTGCGTAGGACACACCAGAAGTTTGTCATCGCCACCTCTACAAAAGTTGATATCAGCAAGGTTAAAATTCCCAAACACCTGACTGATGCTTACTTCAAGAAGAAGCCACTTCGCAAGCCCAGGCATCAGGAGGGTGAGATCTTCGACACAGAGAAGGAGAAATACGAAATTACAGAGCAGCGAAAGGCTGATCAGAAAGCTGTGGACTCGCAGATTTTGCCAAAGATCAAAGCTGTCCCCCAGCTCCAGGGCTACCTGCGGTCTCAGTTCTCCCTGACGAACGGCATGTACCCTCACAAACTGGTGTTCTAATTGTTAACAACCTAATTAAACTGCTTCATAAGGTT