Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Hmga1
Plot displaying the genomic locations of a parental gene (in chr20) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name high mobility group AT-hook 1
Also known as Hmgi|Hmgiy
Coordinate chr20:7132501-7140155
Strand +
Gene summary Predicted to enable several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and catalytic activity, acting on DNA. Predicted to be involved in several processes, including oncogene-induced cell senescence; positive regulation of cellular senescence; and regulation of transcription, DNA-templated. Predicted to act upstream of or within spermatogenesis. Predicted to be located in senescence-associated heterochromatin focus. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human HMGA1 (high mobility group AT-hook 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hmga1

Retroname Coord Strand Genomic Region ENSG
Hmga1P2 chr15:58203123-58203976 + Intergenic
 N/A UCSC
Hmga1P1 chr5:68907016-68908575 - Intragenic
 N/A UCSC
Hmga1P3 chr18:66336587-66337179 - Intergenic
 N/A UCSC
Hmga1P4 chrX:33348072-33349612 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>XM_006256164.2
TGGCGCGGGCGGGCCCGTCCCTCCCGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGAGCCGGGGCTGCGCTCCTCTAATTGGGACTCCGAGTCGCGGCTATTTCTGGTGTTGGCGCGGCTCCAAGAAGGCAGCCAGACTCACTCTGTGCTGCCCCACACATAGAGAAGCAGAATGAGCGAGTCGGTCTCAAAGTCCAGCCAGCCCCTGGCCTCCAAGCAGGAAAAGGATGGGACTGAGAAGCGAGGCCGGGGCAGGCCGCGCAAGCAGCCTTCGGTGAGTCCTGGGACGGCGCTGGTAGGGAGTCAGAAGGAGCCCAGTGAAGTGCCAACCCCGAAGAGACCCCGGGGCCGGCCGAAGGGAAGCAAGAACAAGGGCACAGCCAAGACGCGGTTACCACAACTCCGGGGAGGAAACCAAGGGGCAGACCCAAGAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCCCAGGAGTCCTCGGAGGAGGAGCAGTGACCACTTGCAGTGCCGCCTGCTCCTTGGCCACTGAGGAGCGGCCTTCCCCTGGGACTGGAAGCCCTGCTCCCAGGCCCCGCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGCGGCACCCACGGGAGCAGGATTTGGCTCAGTCCCTGTGCCCTCCTCCCCAACACACCTGCCCCCTCCTGACAAGGTTAACTTCCCATCAAGCCGCAGCCCAGCCTGCTGCGTGCCTCCCTCAGAGCCCTCGCTCTTAGCTCTCCGGGCGCTTTGTTTCGCAGGTCCCTCCTGCCCTGCTGCTCCTGGCTTCCCTGTAGAGGGTCCTTGGAGCATTCCCTGGCCTTAAGGGGCCACAGCCCCATCTCATTCCGACAAGCCCCGATGGCTGACCTGGCGGCAGCAGTGTGGTCAGTGCAGGGGAAGCTTAGGTCCCAGCATGTATGTCCCCCATCAAGCGTCACCGGGTGGGTTTCTCAGTCCCTCCTGCCCCACCCTACTGAGAATCCTGCACCAGGTTGGCTGAGCCCCTTGGCTGGACAACAGGAAGTAGGATGGTGTTGGCTCCACCCACTTTGCTGCTCTTCCCTGGGACAAGACAGATGGGCGCTACCACCCATCTCGAGTGAGGTCCTGAGCACTTCCACCTAAGGCAGACGGGGCTCCAACAGGCGCCTCCCCCACTACACTCTTCCTCTAGCAGGGCACCAAGGAGCTCGCCTTGCCCCCCCTCTCCTTTTGCTCCTCCCTGCCCCCCAAGGTTCTGGTTCCACCTTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGTGTTTTTTGTTCAATGTTCATTCTTAGACACCCACCATTGCTGCTACCAGCGCCAGATGTCCATCCTCCCGATTTTGCCTGTACCCCCCACACAATACACTCTAGGGGAAGGGGGGGCTGGTGTGCAGCAGCAGGCTGGTTACCGAGTACCCCACGCTAGGGAAGATGGGGCCCCCGCCCCGTGGATGCTGCAGCAGAGTGAGGAGGGGGGGCCCACTTGGATGGGAAAAGGGTATAGGACCACCTCCCCTTGTTGTGGGGGAGGGGTGGCCAGTATTTGTCCCAGCCTGGGGCTCCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAAAAATAGCCTTTTCTGGA
>XM_017601532.1
GTCCCTCCCGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGAGCCGGGGCTGCGCTCCTCTAATTGGGACTCCGAGTCGCGGCTATTTCTGGTGTTGGCGCGGCTCCAAGAAGAGCCAGACTCACTCTGTGCTGCCCCACACATAGAGAAGCAGAATGAGCGAGTCGGTCTCAAAGTCCAGCCAGCCCCTGGCCTCCAAGCAGGAAAAGGATGGGACTGAGAAGCGAGGCCGGGGCAGGCCGCGCAAGCAGCCTTCGAAGGAGCCCAGTGAAGTGCCAACCCCGAAGAGACCCCGGGGCCGGCCGAAGGGAAGCAAGAACAAGGGCACAGCCAAGACGCGGAAAGTTACCACAACTCCGGGGAGGAAACCAAGGGGCAGACCCAAGAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCCCAGGAGTCCTCGGAGGAGGAGCAGTGACCACTTGCAGTGCCGCCTGCTCCTTGGCCACTGAGGAGCGGCCTTCCCCTGGGACTGGAAGCCCTGCTCCCAGGCCCCGCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGCGGCACCCACGGGAGCAGGATTTGGCTCAGTCCCTGTGCCCTCCTCCCCAACACACCTGCCCCCTCCTGACAAGGTTAACTTCCCATCAAGCCGCAGCCCAGCCTGCTGCGTGCCTCCCTCAGAGCCCTCGCTCTTAGCTCTCCGGGCGCTTTGTTTCGCAGGTCCCTCCTGCCCTGCTGCTCCTGGCTTCCCTGTAGAGGGTCCTTGGAGCATTCCCTGGCCTTAAGGGGCCACAGCCCCATCTCATTCCGACAAGCCCCGATGGCTGACCTGGCGGCAGCAGTGTGGTCAGTGCAGGGGAAGCTTAGGTCCCAGCATGTATGTCCCCCATCAAGCGTCACCGGGTGGGTTTCTCAGTCCCTCCTGCCCCACCCTACTGAGAATCCTGCACCAGGTTGGCTGAGCCCCTTGGCTGGACAACAGGAAGTAGGATGGTGTTGGCTCCACCCACTTTGCTGCTCTTCCCTGGGACAAGACAGATGGGCGCTACCACCCATCTCGAGTGAGGTCCTGAGCACTTCCACCTAAGGCAGACGGGGCTCCAACAGGCGCCTCCCCCACTACACTCTTCCTCTAGCAGGGCACCAAGGAGCTCGCCTTGCCCCCCCTCTCCTTTTGCTCCTCCCTGCCCCCCAAGGTTCTGGTTCCACCTTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGTGTTTTTTGTTCAATGTTCATTCTTAGACACCCACCATTGCTGCTACCAGCGCCAGATGTCCATCCTCCCGATTTTGCCTGTACCCCCCACACAATACACTCTAGGGGAAGGGGGGGCTGGTGTGCAGCAGCAGGCTGGTTACCGAGTACCCCACGCTAGGGAAGATGGGGCCCCCGCCCCGTGGATGCTGCAGCAGAGTGAGGAGGGGGGGCCCACTTGGATGGGAAAAGGGTATAGGACCACCTCCCCTTGTTGTGGGGGAGGGGTGGCCAGTATTTGTCCCAGCCTGGGGCTCCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAAAAATAGCCTTTTCTGGACA