Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Atp6v0c
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ATPase, H+ transporting, lysosomal V0 subunit C
Also known as Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3
Coordinate chr17:24382839-24388652
Strand -
Gene summary Predicted to enable P-type proton-exporting transporter activity and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of autophagic cell death; positive regulation of ERK1 and ERK2 cascade; and positive regulation of Wnt signaling pathway. Predicted to act upstream of or within lysosomal lumen acidification. Predicted to be located in Golgi apparatus; lysosome; and synaptic vesicle. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; genitourinary system; musculoskeletal system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Atp6v0c

Retroname Coord Strand Genomic Region ENSG
Atp6v0cP1 chr6:37782909-37784027 + Intergenic
ENSMUSG00000080242 UCSC
Atp6v0cP2 chr7:4415321-4416440 + Intragenic
ENSMUSG00000108761 UCSC

Expression

Transcript Sequences

>NM_009729.4
GGCCGCCATCTTGCTTTGCGGTGCTGGTATTTAGAGCGCAGCGCCTGACTGGCGGGGTCGCCTTCCCATCCGCTGCCTCGACGATCTTCGCTTGCCTCCTCGCTCGCTGTCCCGTTGTCCTAGCTCGCCGCCGCCCGCTGAGCTTGTCTTTTCCCTGCTTGCAGACATGGCTGACATCAAGAACAACCCCGAATATTCTTCGTTTTTCGGTGTCATGGGCGCCTCGTCCGCCATGGTCTTCAGCGCCATGGGAGCCGCCTATGGCACAGCCAAGAGTGGCACTGGCATCGCAGCCATGTCAGTCATGAGGCCAGAGCTGATCATGAAGTCCATCATCCCAGTGGTTATGGCTGGGATCATCGCCATCTACGGCCTGGTGGTGGCAGTACTTATCGCTAACTCCCTGACTGATGGCATCACCCTCTACAGGAGTTTTCTTCAACTGGGTGCTGGCCTGAGTGTGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCATCGTCGGAGATGCTGGTGTTCGGGGCACTGCCCAGCAGCCTCGACTGTTCGTGGGCATGATCCTGATCCTCATCTTTGCGGAGGTGCTTGGCCTCTACGGTCTCATCGTGGCCCTAATCCTCTCCACAAAGTAGTCCTTTTCCACCATCAGTCACAGGATAGGATGTAAAGATCACCCCTCCTCATTCCAGAACGAACAGCCTGACACATGCACGGGCAGCTGCCCCTCAGTAGTTGGTCTTGTAAATGTGCAGTGTCCTAGTGCCCATTGTCTGTCGCCCCCGCCTTGCCCCTACTGCACCGTGCTGTGGACATACGGGCCCACTCATCTCCCACCCAGGCCCCTGACCAGTGACGAAGTCAGCCTCTGGTTACCCCACCCATCGCCCTAGAGTGCTCCTGTGTATAAGAATGAACTAGAGTTGTCATTTTTCTCTTCACTGGATGTTTATTTATAAAAGATTTGACCTATTCATGCGTCTGTGGAGCAGCTCCTGTCTCCCAACTATATAGTAATCATTAGTAGACTGTTGCCTTGTGGGGTTCCTGTTGCTGAGACTCCTTGGATGGAGccacccttccccctgccctgaacAGCCAGGGTGGAGGATAGAGTGCTACTGCTCCTCAGAGCTGGCTCCCAGCTGTGTCCAATAAAAGTTCTCGGATGTGA