Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cast
Plot displaying the genomic locations of a parental gene (in chr13) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name calpastatin
Also known as -
Coordinate chr13:74840485-74956993
Strand -
Gene summary This gene encodes an inhibitor of the calcium-dependent cysteine protease, calpain. This protein plays roles in multiple processes, including apoptosis, cell cycle regulation, and membrane fusion. Multiple protein isoforms exist which contain unique N-terminal domains, and multiple inhibitory domains that share homology with each other. Some isoforms may be tissue-specific. Two different pseudogenes of this gene are found on chromosome 19. [provided by RefSeq, Jul 2014]

Retrocopy(s) from Cast

Retroname Coord Strand Genomic Region ENSG
CastP1 chr19:7953418-7956999 + Intergenic
ENSMUSG00000118036 UCSC

Expression

Transcript Sequences

>NM_009817.4
GGCAGCTGTGTCCTGTGCGGTGTCAGCCGGGTCCCAGCCAAGCAGAGTGTCATCGTGGTGCACGTTCTGCGTTCTCGAGAGGTTCCCAGCGGAGCAAGTCAGGGTTGTCGCGATGGCATTCGCAAGTTGGTGGTACAAGACGcatGTTAATGAAAAGAATATTGGATCATCTTCTAAaccaggagaaaagaaaggatccGATGAGAAAAAAGCAGCAAGTTTGGGGAGCAGTCAGCCTTCCAGACCACATGTTGGTGAAGCTGCCACAGCCACCAAGgTGACAGCTTCCTCTGCTGCCACCAGCAAGTCCCCCAGCATGAGTACCACAGAGACTAAGGCTGTGAAAACAGAGTCTAAGAAACCACAATCAAGTGAGCAACCTGTGGTTCACGAGAAAAAGTCAAAAGGAGGGCCAAAGGAAGGGTCAGAGCCCAAAAATCTTCCGAAGCACACATCAAGTACAGGAAGCAAGCATGCTCATAAAGAAAAAGCACTTTCCAGATCAAATGAACAGATGGTGTCAGAGAAACCATCAGAATCAAAGACAAAATTTCAAGATGTTCCTTCAGCTGGTGGAGAGAGTGTGGCTGGAGGTGGGACTGTGGCCACTGCCTTGGACAAAGTGGTTGGTAAGaaaaaagaacagaaaccaTTCACACCAGCTTCACCTGTGCAGTCCACACCGAGCAAGCCATCTGACAAGTCAGGCATGGATGCTGCCTTGGATGACCTGATAGACACCTTAGGTGGACATGAAGATACTAACAGAGATGATCCACCATATACTGGACCAGTAGTTTTGGACCCAATGTATTCTACCTACCTTGAGGCACTGGGTATAAAAGAAGGGACTATTCCTCCAGAGTATAGGAAACTTTTGGAAaaaaatgaagggaTCACACAACCTCTTCCAGACTCTCCTAAACCTATGGGGACTGACCAGGCTATAGATGCCTTGTCATCTGATTTCACCTGTAGTTCTCCAACTGGAAAGCAAAGTGAGAAAGAGaagtCTACTGGGGAAATTTTCAAAGCTCAGTCTGCAGGAGTGACCAGAAGTTCTGTTCCCcccaaggagaagaaaaggaaggtggaAGAGgAGGTCATAAATGATCAAGCACTTCAGGCTCTGTCAGATTCACTGGGCACCCGGCAGCCAGATCCTCCGAGCCACGTTAGCCAAGCTGAACAAGTCAAAGAGgcaaaagcaaaagaagaaaggcaggagaAGTGTGGTGAAGATGAGGACACAGTCCCAGCTGAGTACAGGTTAAAACCAGCAAAGGATAAAGATGGAAAACCACTATTGCCAGAGCCTGAAGAAACATCTAAGAGCCTGAGTGAGTCGGAGCTGATTGGGGAGCTTTCAGCAGATTTTGACCGATCTACATATCAAGACAAACCATCTACGCCAGCTGAAAAGAAATCCAATGACACATCCCAAACTCCTCCGGGGGAGACTGTGCCTCGGGCCTCCATGTGCAGTATACGGTCAGCGCCACCCAAACTAGCATCCTTGAAGGGCGTGGTACCAGAAGATGCTGTTGAAACCTTGGCTGGAAGCCTGGGGACAAGGGAAGCAGATCCAGAACATGAAAAAACTGTGGAGGATAAAGTCAAGGAGAAAGCTAAAGAAGAAGAGCATGAAAAACTTggtgaaaaagaagaaacagtgcCTCCTGATTATCGACTAGAAGAAGTCAAGGATAAGGATGGAAAACCACTCCTGCCCAAAGAATCCCAGGAACAACTTGCACCCTTAAGCGATGACTTCCTTCTTGATGCCTTGTCTCAGGACTTCTCCAGTCCGGCAAACATATCGTCTCTTgaatttGAAGATGCCAAACTTTCTGCTGCCATTTCTGAAGTAGTTTCTCAGACACCTGCTCCAAGCACCCATGCAGCAGCTCCACTGCCTGGCACTGAGCAGAAAGACAAAGAACTTGATGATGCCTTGGATGAACTTTCTGACAGTCTTGGACAAAGGCCGCCTGATCCAGATGAGAACAAACCACTGGATGACAAAGTGAAGGAGAAAATCAAACCAGAGCATAGCGAGAAACTGGGAGAAAGAGACGACACCATCCCCCCTGAATACAGGCATCTCTTGGATAATGATGGGAAGGACAAACCAGAGAAGCCACCGACTAAGAAAACAGAGAAACCTGATCAGGACCGGGACCCCATTGATGCCCTCTCAGAAGATTTGGATAGCTGCCCCTCAACTACAGAGACCTCAAAGAATACAGCAAAGGGGAAGAGCAAGAAGACTTCAAGTTCCAAAGCATCCAAGGACGGAGAGAAAACAAAGGACTCTTCCAAGAAGACAGAGGAAGTGTCCAAGCCAAAGGCTAAAGAAGATGCAAGACACAGTTAATGAATTTGgGTATCTGAATAGAAATTCTTCAGCTGGTGGATGGTGACTTTTGAAGAACAAAGGCTTTGATGACAGTTTTTTCTGGGTGGTTTCTGGACAGTGGTATTTGTTATGTCTTTTGACATCTTAAACACTGAGTTGTTATTCTTTTCCAGAACGAAAATGAATTTGTCTGCTTCACCTGTGTTCTGTATTGAGTATTGATAAACTTCAAAGATTTTTAATTGCCCTTAGATGGGAGAAGGAAGCTTTATATTTGTAAGAAATATATTTGATAGTTTCTTAAAACACCAAAAATCCCAGAAAGCCTTTACAAACCTTTGCACTTTATATATACAGTGCCTGTAAATCTCATTAGTATTTTTGGTTTGCACTAAATTTTTTTAGCATTTGAAAAATAATGCTCCCAACTTTTGTCAGTATTTTGATTTCTTATTATGTCTTTTTCTTCAGCTTTGATGTATCTTTGGGTTAATGTTGATAAGTCAAACATGAAATATTGTATACTCGGTGTATAACTCTTTTGGGGATGctaataataaattaatgataGATGACCCAAGGTAAACCTTGGGAGCATCAATCTCCTTTCCTGCCTGAACTCTACTTTCTTAGGAATGAGGACTTCTACTCATGGTCAAACAAGACACACTGAGACTTGAATGAAGCTAGCAGAAAAACAGCACAGACTAGAGTTTAACGTATAACTTTTAGCAATAAATTGGGGATTCTTAGAATACTCATATGGCTTGAACTATCCTGGTTTACCATGGCATTAAACTGTGGTTTCCACCCTCTACATGAAAACCAGATCAAAATCCTTTGCTTATAGTCACTTGCCACATTGTCTAAAGCATCTTTACCAAACACAAAAATCAACTtctttaaatgtgtgtatgtacatacaatgGATACACTGAAATTTAAAATCTGCTGCTATATCAAAGCAGGTTAAATTATCTTAACATCTTTGAATGGTACCTAAGATTTTTCTGAGCACTGTACTGGTATCATTGATGGAAATTTGATAAACAATTAATTCCATTTCTACTTCCTAGCAATGAATGCTGAACAAGATGTCAGGTGCATATAAACCAAACTTCAACTTTCTTGTGTCCAGAAATCACAGCCTTTGTTGCCATCAATGTAAAGATTTTACTACGATTTAATTAACTTTACTAAATATAACTTACATCATGAGCAATTCCCAGGGGATAGGTAAGACCAAGCAAAACATTATATCCATAATGAACATGATACTTTGTTAACTGTCTCTAAAATTACTCTCTACAAAATATGCATGCACCtcttagatttcaaatgctacccaCAAAAGTATTTAATTCCCAGTCCTATAAAAGGGACAGTCACTATTCTGTTTTTAAGGCACTGATAAGAATGTACTccctgggcggtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaagcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaagc