Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cbx3
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name chromobox 3
Also known as HP1g|M32
Coordinate chr6:51447596-51460684
Strand +
Gene summary Enables transcription cis-regulatory region binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in chromocenter; chromosome, centromeric region; and nuclear envelope. Is expressed in several structures, including central nervous system; embryo ectoderm; gonad; gut; and retina nuclear layer. Orthologous to human CBX3 (chromobox 3). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cbx3

Retroname Coord Strand Genomic Region ENSG
Cbx3P8 chr7:106551442-106552991 + Intergenic
ENSMUSG00000108933 UCSC
Cbx3P14 chr13:115595369-115595949 + Intergenic
N/A UCSC
Cbx3P1 chr1:44878287-44878901 + Intergenic
ENSMUSG00000100434 UCSC
Cbx3P2 chr1:45552782-45553274 - Intergenic
ENSMUSG00000100218 UCSC
Cbx3P3 chr1:58685754-58687476 + Intergenic
ENSMUSG00000059647 UCSC
Cbx3P15 chr13:65564332-65566034 + Intergenic
ENSMUSG00000113207 UCSC
Cbx3P16 chr13:67012507-67014225 + Intergenic
ENSMUSG00000071294 UCSC
Cbx3P17 chr14:74191356-74193066 - Intergenic
ENSMUSG00000057886 UCSC
Cbx3P5 chr4:83619262-83620557 + Intragenic
ENSMUSG00000080793 UCSC
Cbx3P4 chr4:144224445-144225616 - Intergenic
ENSMUSG00000082835 UCSC
Cbx3P7 chr5:88575613-88576480 + Intergenic
ENSMUSG00000105013 UCSC
Cbx3P6 chr5:151204515-151205377 + Intragenic
ENSMUSG00000107154 UCSC
Cbx3P9 chr7:19806601-19807265 + Intergenic
ENSMUSG00000109103 UCSC
Cbx3P10 chr7:20702048-20702741 + Intergenic
ENSMUSG00000109272 UCSC
Cbx3P11 chr7:21984763-21985456 + Intergenic
ENSMUSG00000108944 UCSC
Cbx3P12 chr7:22642953-22643617 + Intergenic
ENSMUSG00000109345 UCSC
Cbx3P13 chr9:7723038-7724756 + Intragenic
ENSMUSG00000110887 UCSC

Expression

Transcript Sequences

>NM_001355002.1
GACTCCTTCTATCCTTATCAGGACAGTACTTGGGAGCTTGAGGCTGGGGATTGCCAGGCGTTGAAGCCCAGACTGGACTATAGAGAGTGATTACCGCACCACCACCCccggaaaaaaaaagccagaaaataGGACTGGGACATCTTAATGTGTTCCTTTTTTTATACCGTGATTGAACAGGGAGGGCCTCTGAAAAAATAAGGATGGAATTATATGAGCTCCTTGGAGTATTCagaaatctaaagaaaaagatcTTATGCTCTTCAAGTCTccgattaaatttaaaaaatggcctCCAATAAAACTACATTGcaaaaaatgggaaagaaacaaaatggaaagagTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGGTTCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAAGAGAGATGCTGCTGACAAACCAAGGGGCTTTGCCAGAGGTCTCGACCCTGAACGAATAATCGGCGCCACAGACAGCAGCGGAGAGTTAATGTTTCTCATGAAGTGGAAGGACTCGGACGAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATGAAGTGTCCTCAGATTGTCATTGCCTTCTACGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGATGAAGCACAATAATTgtttgcatttatatatatatatttatatatatatataaaatctggaTCTTGGGTTTTGAATTACTAGTGTGGAAAAAAATAGCATTCTAATGAAAATCAAGTTTGATATGCTGGTTTTGAAAGTATTGACAGTAGTtgggatatttttggtttttgttctgcaTCAAAAGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTGTAGTTGCTTCCTTTAACAATAGAATATTTGATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGCTTTTCTTAAACGCTGGGGAGATTTTACAGTTATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGaccattctgggtttttttttgttttttttttttttttttttttgtttctatgtggTGTATGCATAAAACAcataacttgtttgttttgttttgtttttaactgaagATGAAAATACAAGTTGATGAGATTCCCTCCTTGTGAACATTTTCCTGAAACCATAACCTTTCAGATTAAGCAGATTCTGTGATTTATTGGCTAGTTTAAAGGCAACAACATCAGAATTGATGTATTATCACATAAATACAGTGGTATATTTACAGAGTGTTGTACATGTCCCCTTTGGAAAATGGAATTAGACTAAGTAATAGTGTGATTTAATAACAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCcagctgagaggcagaggcaggtccagGTCAGCCAGTCTATGTAAAGGTTCCTCTGGTGAACTTTGTAGAAAGTTAAAGTCTGTACTAAAAGGTTATGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAATTTGCTAATATCAATTAATGACCTGCATGCTTTTTCTTTACCCTGACTCATTCCTTACTGGTAGGATCAGTCTTTTCAGTATTTGGGTTATGGTTCAATGAGCCAGAAAAGTAACTTTGTAGTATCAGAATGTCATCCAACTGTATATTTACTTTATTGTAAATAATGGTGAACAGTGGTCAATAAATAGTTTTATATTCCTTTA
>NM_007624.4
GGGcggtgctccccctcccccccggcGGAGCTGCCCGCGCCCCCTCCCCTCGGATGTGGCTGAACCGAAGCGCGCAGGCGGGAGACTCTGCAGGATCCGCGGCCCTGAGCATCGGAGCGGTGAACTCTTCAAGTCTccgattaaatttaaaaaatggcctCCAATAAAACTACATTGcaaaaaatgggaaagaaacaaaatggaaagagTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGGTTCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAAGAGAGATGCTGCTGACAAACCAAGGGGCTTTGCCAGAGGTCTCGACCCTGAACGAATAATCGGCGCCACAGACAGCAGCGGAGAGTTAATGTTTCTCATGAAGTGGAAGGACTCGGACGAGGCCGACTTGGTGCTGGCAAAGGAGGCGAACATGAAGTGTCCTCAGATTGTCATTGCCTTCTACGAGGAGCGGCTGACTTGGCATTCTTGTCCTGAAGATGAAGCACAATAATTgtttgcatttatatatatatatttatatatatatataaaatctggaTCTTGGGTTTTGAATTACTAGTGTGGAAAAAAATAGCATTCTAATGAAAATCAAGTTTGATATGCTGGTTTTGAAAGTATTGACAGTAGTtgggatatttttggtttttgttctgcaTCAAAAGGCACTGATTCCTTTGAGCAAGTAAGAGCTTTCTGTAGTTGCTTCCTTTAACAATAGAATATTTGATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGCTTTTCTTAAACGCTGGGGAGATTTTACAGTTATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGaccattctgggtttttttttgttttttttttttttttttttttgtttctatgtggTGTATGCATAAAACAcataacttgtttgttttgttttgtttttaactgaagATGAAAATACAAGTTGATGAGATTCCCTCCTTGTGAACATTTTCCTGAAACCATAACCTTTCAGATTAAGCAGATTCTGTGATTTATTGGCTAGTTTAAAGGCAACAACATCAGAATTGATGTATTATCACATAAATACAGTGGTATATTTACAGAGTGTTGTACATGTCCCCTTTGGAAAATGGAATTAGACTAAGTAATAGTGTGATTTAATAACAAGACTTGGGCTAGAGGCAGATAGAGCTCTGACCTAAGAGGCcagctgagaggcagaggcaggtccagGTCAGCCAGTCTATGTAAAGGTTCCTCTGGTGAACTTTGTAGAAAGTTAAAGTCTGTACTAAAAGGTTATGATTTATGGAATCTGTTTGATGTGGAAATAGAATCGTGGCTGGAGCTGACGTTGGCAATTTAAGACCTGCTAAGTGAGTGAACAAAATTTGCTAATATCAATTAATGACCTGCATGCTTTTTCTTTACCCTGACTCATTCCTTACTGGTAGGATCAGTCTTTTCAGTATTTGGGTTATGGTTCAATGAGCCAGAAAAGTAACTTTGTAGTATCAGAATGTCATCCAACTGTATATTTACTTTATTGTAAATAATGGTGAACAGTGGTCAATAAATAGTTTTATATTCCTTTA