Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cbx5
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name chromobox 5
Also known as 2610029O15Rik|HP1|Hp1a|Hp1alpha
Coordinate chr15:103099973-103148337
Strand -
Gene summary Enables several functions, including histone deacetylase binding activity; identical protein binding activity; and methylated histone binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in chromocenter; chromosomal region; and nucleolus. Part of histone deacetylase complex; histone methyltransferase complex; and transcription repressor complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Orthologous to human CBX5 (chromobox 5). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cbx5

Retroname Coord Strand Genomic Region ENSG
Cbx5P1 chr4:136946310-136947681 - Intergenic
ENSMUSG00000080806 UCSC

Expression

Transcript Sequences

>NM_001076789.2
GATCCGTTTTGGCGGGCGGTTGGCATTGCGCAGAAGGCGGCGGTAGCGGTGGCTTGTGGTGCCGCTTTACCACAGAGGAACCGTGCAGGCCTTAGCGTGAGTGATCACTTTAGATCTTGGGAACCTGGTGGCCATACTCCTTCAGGTGGATCAACAGGCACACGACATGGGAAAGAAGACCAAGAGGACAGCCGACAGCTCTTCttcagaggatgaggaggaataTGTGGTGGAAAAGGTGTTGGACAGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTTGAAGTGGAAAGGCTTTTCTGAGGAGCACAATACTTGGGAACCTGAGAAGAACTTGGATTGTCCTGAACTAATTTCTGAGTTTATGAAAAAGTATAAGAAGATGAAGGAGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAGGAAACAAGAGGAAATCCAGTTTCTCCAACAGCGCTGAtgatattaaatctaaaaaaaagagagagCAAAGCAATGATATCGCTCGGGGCTTTGAGAGAGGACTGGAACCAGAAAAGATCATCGGAGCAACAGATTCCTGCGGTGACTTAATGTTCTTAATGAAATGGAAAGACACAGATGAAGCTGACCTGGTTCTTGCAAAAGAAGCTAACGTGAAGTGTCCACAGATTGTGATAGCATTTTATGAAGAGAGACTGACGTGGCACGCATATCCAGAGGATgcggaaaacaaagaaaaagaaagcgcGAAGAGCTAAAGGAGGAGGCAGTCTCTGTCGTTTCTCTTTGTATATAATACCTTTactttcctgcctcctctctctcctcccacccctttCCATCCTAAACGCATCCATAAACCACTGCGCTCATCACTGTGCTCCACGGGGGAGATGCTGGTATTGGTTCTCCTGTAATATAACTGATGATCTGATTCCTAAGTGTAGCTCTGTGAACGTCAGGCATTACGTCATTCACATGCTGTGTGGTTCCCATAGTGTTCTCTTTCACCCtgatcttttccttctgttccccTGTAACTTTTTAATCACCTTAGAGTCATGATCTTTGGGGTTGGTTGCTTTGGGAGATTTTATTATGACGATGACTTCAGTTTCTTGATTGTTATTAGATTATATTGATGACCAGCTGGCCTTTGTTTTGACATACTGGCATAGAAAGGATATTGTCCATCTATTTAGAAAACTATTAAGGGCAACCTACCTGTTGTGTCTTTTCCGATCTCATTTAGCTCTGCCAGGAGAATACAGGGTCCCTGGTGTGGTCTTGGGCCGCTCCTGACTATCCTCACATACCCTCCCATAACAATTCAGTTCTCTTAGGGCTTGAAACTTCACATTTAAATCTGTCAAGGCGCTCTGTTTAGCCCTCACACTTTCTTGGCCTTGTTACTTTCAATCCCTGATTCTGCTTCTGTAAAGTGGTATCAATTTGTTATTAAATGACAAGATTAACTGTGGAGTCTGTAAGCTGTAGTGCAGGAAGATAATAGGATGGGGCTGGATACAGTTATcacgtggtgtgtgtgtattctttccTTTATCCCTCATATTTAGACTGTATTTATGTAGGTGTGAGTGATTGCCTGGTGCTTGCTTGTGCCAAGGTGCTGGGCACCCTCTAACCCTGCCAATTTTTATGGCCTCCCAAAGCATTCCTGTACCAAAGAGGCATCAGCAGATCCATGCCATTCCCTTCCGTGCCATTattttaagttgggaatttttGGAGAGGAGCCACTAGCCACAGTGTCACTGGCTTTTACGTCCTTGCAGCAGTGATGCTCTTTAATTTACTGCCTCATGGCTTGTGGATTTGCCACCAAGTCCTCAGAGGATTAATGTTCCTGTCCTCTCCACTTGAGTCTGAGGATTTTTAGTTGtagcttattttaaaaacatagaagATTATGGCCTCAGAAACCGACAGGTCTTGATATTAACTTTTTGACACAACCTTCTCTCACAACAAACTACTTCCTTTTTGGTTTACTCTTGCTTTGCTATTATTTCTGCTCCTATTCTACTTTTTGTCCCCTGAAAAATGCCCatcttctcttcatttctttcttcttgtataGTTGAGGAAGCTGGAGAATCAGGACTAAAAGTAAGGAAAtaacagagtttggagctgagcagTCTTGTCCCAGCTCCAACGCTGAGGAAAAAGAATAAACGCTGAAGTAGCCTTAATTCCAGACTTCGTCAGCTACTGAGCTGCTTTTGTTGTTgcgtttgatttttttaaagcaaagctgTCTGGGCCAGAGCATCTAGCCACCGGGTTGTTGATAGTAATGAGAGGAATGGATGGAGTGCTTCAGTCCACAGAtgagccagataatatgcaaaccCTAGACCCATTCACAGCATTTGTTAACACTGCTTTCCTGCTCAGCTGCTACTTGAGTTCTGTGTTCTTGAATAAATTATGCCAACAATTATACTGCACCGTTGAGAAGGCAGCTTGTACTGCAGTGACATGGTAGACAGACAGTGAAGCTTTGCCTTACTTAAGTCAGCCAGGAACAACTTGTGAATGGTAATGTGGTGGGAGAATAGCACCTAACCCATACCTCACATGGGTGAGCTTTTTCTCTCTGTAGTCCGTAGTTGTCTGAAGATGTTAGAGGCAATATCAAATGCTGGATAAGTGACCGATGTCTGTACTTAACTTGATGAAATGAAGGATGGTTAGAGAGCAGATCTGTCCTTCAGGCAACCAAGGCTAGTAGTAATTAGGGCAGATGAAAATAGCACAGAAGTAGCCAGAGCTCCTGAGGATCTTGACTGGCAACTAGAGGAAAGGACCACCCACTGAGTAGTCAGGAGTAGTGGGCATGTACATTGCAGTGACcatattttttaaagcaaaatcttAGCCTTTGGGCAACCATAACAATGATATTTAGTCCTATATAATATAAACCATAATAATGAGATTAGTCCTAAGAAGTCTGGCCTGGTGACAAAAAAGTACACAGTCCCAGACTGATACAGGGGTACTGTATGTTCAAGGCCTGTTTGggaacttagtgagaccctgactcaagataaaaaataaaaggaccgAGGATACAGTCTGAGAGTTAATGCCTTGTAATGcaaaaaatgaagggaaaaagTGTCCTGCTGGTTTTAATgctctttgtaatttttttctcttaaaagttCATGGAGTATTGGTTTTCTGTTAACTATTACCAAAAcatccttgttttcttcttagtACTTTTCCTGGTTATATATAGAAATAGGGAACCGGGATTCTAGTATTATCTTCAACACTCAGTGTAAAGAAGCCAGACACCCATCTGTGCCTCCAGCATGTGTTGTGCCAAGTAGCTTGTTTCTGCTGGAGAATTGCAGCCTTGGACAGAAGTGTTTCCTAGAGCTATCTTCCCTCTAAAGAGTTCACAACCAAAGGTGAAATACTCCTAAACACTTGACTATATTCTCCTGTGTTAATCCTCTTTCAAAACTAATTTTGTGGTACTGGGACTTGAGCTTagacatgccaggcaagtgctgtgCCACTGAACTGATGTCTTTTTCTGCCCCTTCCCCGCCATACACCATTTTATTGTTGTTCTAAAGACTTAGTCTCTgataccaggctagcctcaacttgCTGTATAGACAAgttgaaaagaattttttttttcatctgtagcagtcttcagacataccagaagagggcattgaatctcattacagatggttgtgagccaccatgtggtttctgggaattgaactgggggcctttagaagagcagtcaatgctcttaactgctgtgccatctctccagccctgccaagctgaattcttgatctcttgcctctatctcccagtCTCTAGGATTGTAAGTGTTTGTCACCATATCTGGCTCCTTCTTTTGTAGAGACTGGACCTTCAAAATTACCTATGTTAGCCAGGTATAGTGTAATACACCTTTAATTACAGCATCTAGGAGGCAGAAGTAGACCAATCTTaattagaggccagtctggtctatatagtgagttctaggccagccagaccAGTATAGATTCTGTTgcgaaaggaaaaaaagaaaagattggccttgaacttaggatCTGTTTGTATCAGTTTtgtgccactatacctggctcaaaatctttttttttttaattaagttattGTGTATATGGgatttctgcctgcatgtatatctgtgcaccatatgcatgcctggttccctaggagaccagaagagggtcttATATCCTCTGGGATAGGAGTGAGCTGCTATGTGAGTATTGAGAAtcaaatcctggtcctctggaagagtgggtGCCACCTCCCACCCTTCAAAACATCTTTTTaatgttgaatttttttcttttttttctcccccgccccgccccccttTTCTGTTTAATCCTGGCTGTTTCTTGCCGGCTTCACCCTTTAATGCTCAAGTTTTGCTAGCTTTACACGAAAGCAGAGGTGAACTGGGTGATCCATCAACATTATACACTGTGCTGTTCACATTTCTACCACTTTAGCATACATCAATATTgttttcattcaacaaacattttgGCTCAGGATACAAAGTTTAAACTCCTTTGCTAGAGAACTTTGATAGTGGTATGGGATGAGTTGATCATTATAGTTTTGTATAATGAATATTGCACATGTATATAAATTACTGGTCTGGGGCAGCAACAGGTATACAGAAGCATGAGCCTTTAGTGGGCagttagctcagtggttgagtgctGGTGGAGAATACATGAAGCAAAGCACTGGGTTCTCacgggaggagggggaggatctGCAATAGGAGGGTGCCATTAACTGGTTTATCTGTGGGAAAGACCTGTTGTCTTGGATGAACTGAGTTAACTGGCCATGTGGAATATTGCAGAAAATAAAGCTAGAAATGTGGTCATTACCAAGAGTGCAGATACGTGAGCATAAGAACCATCTTGTTTAGACTGCCAAAGTATTCATGACTTTGTATTGTCTGAAGATCTCATTGTATGTGGTGGTGTTATGGGTCTGTTTGTATATTTCTTCTTAATGGGCATTTTAGCAAGTTGCTCACACTGTTCAATTTCTCACCCTTTTGGAGAAATCAACATTAGTCTGGCTTTAAAGCCTAAAACATACCATCTAATGACAGACTTTGTTAGAGAAAAGCTTAGAAGTCAGCTAATATCTGAGTGTCTGCCTTTGGGGAGCAAGCAGCTCCTGTGTCTCTTATATCAAAACCTTCCACAGGAATAATGTGTTCTGGCTCCTCATTGTGCATGACGCCCCTCCCAGATAAGAAACAGTCTGGTTTTCAGGTTCTCATTCTGACTTTTGAGAGCACAAGATAAAGATCTTAGCTCTACTTGGATAATTGACTATAGAAATCAGAATTCTCAGAAATCAACTGCTTTAGAAGGTTAAAATGTgaagtttcttgtttgttttttgcttgtactgaatattttgaattttaatctACCTCGTCTCATTTTTTGTAGTTACTTCTGTCATTGCCACTTGAGCATGAAGCTTGACTTTGGTCGTTGTCTAAAATGGGATCTCTCCTGTTCAGTGACAGTTTATTCTCTTGCCTTTCCTCTTGGCCCCCATTTCACCTAACATCATCTCTTATTGCTCCTGtcagaaatatgttttaaagtCTTGTTTTATGGGAAAAAGTGGTtcaccaatgctgtttgtctctgaGGTCAGTGAGAGAAGGAGTTAAAACACAGTGGTGAAGGAAGGGCAGATCCTGCTCTGGAGGCAAAAGCTGACAAGGAAGGAGTCATTAATTACAGACAATTTCAAAGTCAACTGATTGTGATCATTAATGTCACAATAGATCAAAACCTAATTATCACAGCCTAGGTAAGAGCCATCAGTATTAATCGGAAAATCTAATAGGAAACTATTACCAAGAAATTAGGCCAAATTGAATGCAATGAACTTTTTATCATCTTTTTTTGGTAATGTTCTTGGTGTTGGCAACTGTGACCCTAACAGCTGGTCCAAGCCCAGATTGCTAATTTCACTTTTAAAGAGCCTAGGCTGGCCCTAGTGCTTGTagtactcctgcctcagccttaaaTACTGGGATTATGAGGGGATGTGTGCATTCCTGTttgtgtgggtgggtaggagagaattgaactcagggccttgtacatTTTAGACAagtgctcaaccactgagctgtattcctAGTTCagagtgttttgtttgttagGGAAGTTTCCAGAGAGACTGAATCTGAGCTAACATTGCTGAAACACCAACCTTGAATTTTCTCATCATGGATTTGTCCAGTCTAATCAGATCAGTGGGATATACAGGTATATATTAAAGTCATAGAGTGTCCCTGGTGAACATTGTTGCTGTATCATCCGTTGAGTGCTTGTGTATAGAGCTCTGTACTGGCTGCTGTGAAGGCTGTGGGAGGAAGACAGTGTCCTGCTTTGAAATTCTTTGAGAACTAAAAAGATAGTTTCCTTGTATGACAACAGGAAGAAGATGCAagccagtgttttcctgtttgcaGTAACGCTAGGATTTGATCCTGAACAGCCTGGCAGTGTGCCTGATCCCAGTAGTTCTAAGATAGGAACAAAATGATTTCCCACTGGAATTCTAAGGGATGGGGAAGatatctttgttttcctttctgtgttACAAGTTATATCTCTGGTAGTAGGAGAAGCCATCAGTATGTCCTTAAGATGTTTGTAAAGATGCTACCACCTTTGGGTGAGATGAGTCAGGCAGTGGAAAAGTTGCTGTCCTTTGGGTGTCACAGGAGGAATGCCAGGCAGTAGTAGAGGGAATTGTGCCTAGGAGTCTACACTGTGCCCTGCAGCCCTGCTGCACTTCAGGTGCTCAGTGCTAATCTTACTTAGGAAGGCCATGCTCCTTTCTGGAACTTGGATTACCCACTACAAGACTGAGAATcagtgtcttttgtttgtttggtttttttttttttttttttaagacagggtttctatgtagccatggatgtcctggaacttgctctgttgaccaggctggcctctaactcagagatctgcctgcccctgcctcccaagtactgggatcaaacatgtgtatcaccactgcctggctaacccTTCACTTCTTAAGTGAGTTTTAGTGTTTAAAATGCAACTTAATTTTCAAAATGGCACTAAGGTGGTTTGTCCAGCCTTGGTTTACTCCAGATGAGCAGCAGCCCTCAACAGTGTGTTGATTGAACTCATCTGGCTGCAGTGAAATGGCTGAAAGTGAGATTTTCTAGTGCATACTTCTGTGCTAGCCTCCCTACTTGGTCTTAATGGCTGACCTTGGGCAAGTCTTTCCTTTCAATGCCTCAGTTCCCCATCTGTCAAATGGGGTGATAATACTGACCTACCTCATGGGGTGTTGTGAGGCATTACAGATCAGAGCTGATCAACTCCTTTAGGATTGCCTGTGGAGGATACCTTCAGTCGAAGTTTTTTTAGCCCTCACTGAGCTACTTCCAAGTTTGGAAGTACTTAGTGACCTTGGTGAGTTTCTGTCCCCAATCCCTTAACCCCTCATCAATGCTGCTAGTTCAGATGTTGACAGTGTTTTGTGAATGTTGGAGTCTTGATCATCCAGTCTAACTTGGGATGCTGTGAGGGAAGGCACTTGTGGGCTCTGTGTCTTGCATCACAAAGAGACTTAGAAATTCAAGAGCCTTGGGTTAGGGAATCTTGAGGCAGGAGTGCTACTTCATGTCTTTCTCTGCAGGCAGGAGTTAAGGTCCTATTCTCATGGATGACTTGTGCTGATTGTCTTGGTAGTGTGGATTGATATTGTTGCTTCCATTTTCCAGGCTGACCTAGGACAGGTCGTCCACTGAACTCTTCATGCTCCGATGCCTCTGCCCTCTCATAGAAGCCAGACGGCTCAAGCAACATAACACTCCCTTCCCCTACCAAAAAGAGCtacattgtattttgtttttttctagaaataggTATACCATTTCAGAATTGAGCATTGGTCCTCAAGGCTTCTTTTCAGTTCACTGTGTGTGGAATCTGTCACCTCTTTTCAGTGTATACCATCTGACCCACTGAGGACATCTTGGACACTTGTTTGCCCACCTGAGGGTTCAAGAGCCTTTCTTGCTCTGTCTCAGTATAGGGACTAAGGCATCCCCAGATTCTTCATGATAGGTTTCCTTTTCCCCTACTTGACCTTCTATTGGTACCCATGAAAAAGCACAAGGTCCTAGCTCCCTGTAGATACACACTCCAGTTCTGTTGGGTAGACTCTACTCCTAACAGGGGTCCTAGAGGGTTCTCTGGAGGATGGGAAAGGAACAGTCTCATGTCCTGCCAAATAGTAGCCAGCAGTTGCCTTACCCCTGCCTGCTGGCCATGAACCCACATTCTCACGGAAAGGGCTTTCAGAGACCCCTGGTTTTTCTCAGCACTGTACCATTTTGTGTAGGAAGCAGGTCACACCTTGTAGCCAGGTCTAAATGGAAGTGAGACAGTGAATTCTCTGTGGACTTTTTTGGTTTGTGGGGGGGTTTTGGTTGTGTTTCTTGGTTCTGTTTCAGCCAAACTTGTCtgcttttgatttctttaaaggataagtggtctatctatctatctacacgtATGTTTGCATTTTAAGTGTAagtgttttgagaaaaaaaaaaaacagacattatGTCATTCTACAACTGACATCCAATTCAGACATCATCCTCTCCCCCTTCcaccctctttttcctcttttccctcttttcatACTCTTGTATTGGTTCTAATAAACGATTGCTTTTCAAATATG