Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Clns1a
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name chloride channel, nucleotide-sensitive, 1A
Also known as 2610036D06Rik|2610100O04Rik|Clci|Clcni|ICLN
Coordinate chr7:97345864-97370000
Strand +
Gene summary Involved in negative regulation of cell volume. Predicted to be located in nucleoplasm. Predicted to be part of methylosome; pICln-Sm protein complex; and spliceosomal complex. Predicted to be active in cytosol. Is expressed in several structures, including brain; genitourinary system; liver; lung; and spleen. Orthologous to human CLNS1A (chloride nucleotide-sensitive channel 1A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Clns1a

Retroname Coord Strand Genomic Region ENSG
Clns1aP1 chr2:149198662-149199942 + Intergenic
ENSMUSG00000081470 UCSC
Clns1aP2 chr6:70215082-70215522 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_023671.2
CGACTACTGCTTCCGGGGCAGCTCCGTGCGAGCCGCGATTGCGGTACTCGCCTCTCTCGGTTCGCGTGGAGCGATGCTTTCCCCGGCAATGAGCTTCCTCAAAAGCTTCCCGCCGCCTGGGTCGGCCGACGGGCTCCGGCTGCAGCAGCCAGACACCGAGGCTGTGCTGAACGGGAAGGGGCTCGGCACCGGCACGCTTTACATCGCGGAGAGCCGCCTGTCCTGGTTAGATGGTTCGGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCGGTGTCCAGGGATCCAAACGCTTACCCTCAAGAGCATTTGTATGTTATGGTGAATGCCAAGCTTGGAGAAGAATCAAAAGAACCTCTCTCTGATGAAGATGAGGAAGACAATGATGATGTTGAACCCATTTCTGAATTTCGATTTGTGCCCAGTGATAAGTCAGCATTGGAGGCGATGTTCACAGCAATGTGTGAGTGCCAGGCCTTGCATCCAGACCCTGAGGATGAAGACTCGGACGACTATGATGGAGAGGAGTATGATGTGGAGGCACATGAACAAGGACAAGGGGACATCCCTACATTTTATACCTATGAAGAAGGACTATCCCATTTAACAGCGGAAGGGCAAGCCACGTTGGAGAGATTAGAAGGGATGCTTTCTCAGTCTGTGAGCAGCCAATATAATATGGCAGGCGTCCGAACAGAAGACTCAGTAAGAAATTATGAAGATGGCATGGAGGTGGAAACCACACCAACTGTTGCCGGACAGTTTGAGGATGCAGATGTGGATCACTGAGGATGGCTGACCTACTATACAATTCTGCTCATAACTGTAGGCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCATTTTTCTTCTCCAAAACTCATTTCTCAAGTCAAACTATAATGAGACAGCAAGCTGTCACCAGCAGAAGAGACTATGTATGACCTCTATTAACAAAGGTGAATTAACTGAACGGGTATTTGTAGTTTCTCATTTCCCCCAAGCTTCCTGTGTATGTTCTGAGAAGGCCTCTGAGTCCTGCCTTTGCTGTGTGCGTCTGTCAGCTGCAAGATTCGCCTATGTGGTGAAATGCACAGAGCTCACACTGGGCGGAAGGGACGTGCGGAAGCTTAGATGTCTCTGGGATTCAGGAGAACTCTTATCCCTGAGATTAAAAAGCAGAGGCCTCAGAGGGAGCAGCCGCTAGCATTTTCCACAGAGGCATGGGTCCTCTACTTGGGGCTCAGCCACATCTCGCAATACTTGTGTGCTAGCTTCTGTTATTCTTCATGTACCATCAGCTCTGTTATGTTCTCCTAGGTTAGGTCCTTGACTGTCCACCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGCAAAGTACTCTCAATGATATTTTGTCTTTGTAATAGTTAACAAATAAATCTGGGTTTTTTTCTATATCGCTGTGATTTTGCTCTTGAGTAAAACCATTAATGAGAAAAGACTAAGATATTTAaattgtacatgtatgtgtgttttgcctgcgtacATCATGtgcgtgcctggtgcccatggaggtctgAAGAAGGTGTTGGAACCacaggaactggagttccagttgTTTATGAACGGCCGtgaggatgctggaaactgacgctaggtcctctgcaagagcagcaagtattcttaactgctgagccctctctccagcccagcacttgctgctcttttagaggagcTGGATTCAGTTCCTCTGCTTCtgtgttgggcagctcacagctgctatATGCTGCTGGCTTCCAGGGATCTCAATAGCCTCTTCTGGTTTCCTCAGCTACACATGCAAATGCAGACAGACGCCCATACACATAACAATAGTAACGTTTTAAAGTCCTGCGGGGGCGAGGGGTGTGAATTAGTTGGTGGAGCTGGTCTAgctgcatgaagccctgggtttagtCCCTACCACTTTATAAGCTTGGCCTGGTTGCATATGCCTAtaaattccagtactcaggaggtggaggcaggaggatcagaaattcgaggtcatcctcagctaagTAGCACATGAGCACAGAAACAAAATACTAGTACTGAGGGGAGCTTTGGTGGAGGAGACCGTCTCTGTGTGgagcccatgctggcctggagtttacagaaatctgcctggctctgctctcCTACTGCTGGacttgaaggcatgtgccaccatgctcatttttacttttaattatatatatgcgtgtgggtctgtgcacatgagtgcaggtgcctacgGGATCACAGAGGGTCCAGATCCCCTGGGCCTGGGCTATTTGATGTTttggggaactgaacttgggtcctcttaaTACTCTTAGCGGTTTAACACTGAGCCCCATCTGCCTTATTTCTTGCTATGAGGTTAACTCACTGAACCTggactggctgaccagcaagctccaggcatCTTCTGTCTTCCAGGCCCTCCGTTGACACTACTCCTCTCAACATTGAAAGTATAGACACTGCCCCACTATTGCTTGAGTGGTaggagccaaactcaggtccttacatTTGCAAGGAAGGCAATCTATAAACTAAACCAGTGCCCCAGCTCAATTTTAGTTCCATTTGTTGGGATGTGTATGCTTCtagcaagtctttctttttttttttttaaagatttatttaaagattttatgtgagtccactgtagctgtacagatggttgtgagccttcatgtggttgttggggattgaatttttaggacctctgcttgctccagtctactccactcgctcagtccctgcttgctccagccaaGTACTTACTATgcataggtacactgtagctgacttctaacgcaccagaagagggcgtcagatctcattccgggaggttgtgagccaccatgtgattgaactcaggacctatggaagatcagccagtgctcttacacgctgagccatctcactagcccctagCAAGTCTTTCATAAGGggagtcttaaaacataaagaCCTTGCTGATGCTGCCTGGATTGGGAGTAGTTTTTAAGTTCATCAGCCCTCACTATAGAGTTTCCATAGGCACCTGGGTATTCATAAGGCTGAATTTCGTAGTTCTAGACTTAGGcccttttttgttattgtttttgagacattatGTATCTCtgactggtctagaactcacagagatctacctgccttggtctcccaagtcttgggattaaaggtgtgtacctggACTTTCTGTGGCCTTTGAAAGAAGGTTCTATGCACAATTTGGAGCTGTCAGCCTGATTAGCTGCTAGGTCCTGCTGACAGCCTCAGGCCCGTGGTTGTTGTAGCAGTTTTTCATTGAGTTTCTCATCTTGCAGAATAagt