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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Cox5a
Plot displaying the genomic locations of a parental gene (in chr9) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name cytochrome c oxidase subunit 5A
Also known as CcOX
Coordinate chr9:57423012-57439710
Strand +
Gene summary Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Located in mitochondrion. Part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including alimentary system; hindlimb musculature; integumental system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX5A (cytochrome c oxidase subunit 5A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cox5a

Retroname Coord Strand Genomic Region ENSG
Cox5aP1 chr11:97859591-97860218 + Intergenic
 ENSMUSG00000082715 UCSC
Cox5aP2 chr15:81937697-81938170 - Intergenic
 ENSMUSG00000116044 UCSC
Cox5aP3 chr16:16149443-16149609 + Intragenic
Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_007747.2
GTCGCTGCGTGAGTCCGGCCCCCGCGAACTGCTGTACCGCCCGCGAGCTCACACCGGCTTCTCGTCAGCCTCAGCCAGTGCGCTGTGGTCGCCGTCATGCTCGCCGCTGCCCTCCGTCGCTGTACCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGCCTCGGCTCCCAGCCCCGCCGCCGCTGTCTGTTCCATTCGCTGCTATTCTCATGGGTCACACGAGACAGATGAGGAGTTTGATGCTCGCTGGGTGACATATTTCAACAAGCCAGACATTGATGCCTGGGAATTGCGTAAAGGGATGAATACACTTGTTGGCTATGATCTGGTTCCTGAGCCCAAAATCATTGATGCTGCATTGCGAGCATGTAGACGGTTAAATGATTTTGCTAGTGCTGTTCGCATCTTGGAGGTTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTATCCCTATGTCATCCAGGAACTTAGACCAACTTTAAATGAATTGGGAATCTCCACTCCAGAGGAGCTGGGCCTTGACAAAGTGTAAACTCCCTTCGaTGGGCTTCCTAAGGACTTAACTGCTATTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTTATTTGAACAAATTTTCCTTTGAGTATCAAACCATGTAATAGTAACTTGGACTTTAATAAAGGGAAATGAGTTTGAACTGAAA