Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cycs
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name cytochrome c, somatic
Also known as -
Coordinate chr6:50539543-50543549
Strand -
Gene summary Enables heme binding activity. Acts upstream of or within several processes, including activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c; hydrogen peroxide metabolic process; and regulation of protein binding activity. Located in cytosol and mitochondrion. Is expressed in several structures, including central nervous system; jaw; limb; metanephros; and spiral ligament. Human ortholog(s) of this gene implicated in cholangiocarcinoma; lung non-small cell carcinoma; pancreatic cancer; and thrombocytopenia. Orthologous to human CYCS (cytochrome c, somatic). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cycs

Retroname Coord Strand Genomic Region ENSG
CycsP17 chr10:9462792-9463918 - Intragenic
ENSMUSG00000112162 UCSC
CycsP16 chr10:10069207-10069676 + Intergenic
ENSMUSG00000108973 UCSC
CycsP19 chr11:62222213-62222528 + Intragenic
ENSMUSG00000081944 UCSC
CycsP21 chr13:94190228-94191040 + Intergenic
ENSMUSG00000114174 UCSC
CycsP20 chr13:107484671-107485079 + Intergenic
ENSMUSG00000114459 UCSC
CycsP23 chr16:16666234-16667565 - Intergenic
ENSMUSG00000116729 UCSC
CycsP2 chr2:90634041-90635016 - Intragenic
ENSMUSG00000080977 UCSC
CycsP1 chr2:155327152-155328233 - Intergenic
ENSMUSG00000083341 UCSC
CycsP3 chr3:81312669-81312888 - Intergenic
ENSMUSG00000102223 UCSC
CycsP5 chr4:15636159-15636630 + Intergenic
ENSMUSG00000082673 UCSC
CycsP4 chr4:131971965-131972637 - Intragenic
ENSMUSG00000084105 UCSC
CycsP7 chr5:13170854-13171798 - Intergenic
ENSMUSG00000062038 UCSC
CycsP8 chr5:49581128-49582023 + Intragenic
ENSMUSG00000093490 UCSC
CycsP6 chr5:101453384-101453888 + Intergenic
ENSMUSG00000105965 UCSC
CycsP9 chr6:148942446-148942941 + Intragenic
ENSMUSG00000081532 UCSC
CycsP10 chr7:28234098-28235083 + Intergenic
ENSMUSG00000108925 UCSC
CycsP11 chr7:70562124-70562625 - Intragenic
ENSMUSG00000109454 UCSC
CycsP14 chr8:98071317-98071611 + Intragenic
ENSMUSG00000109937 UCSC
CycsP25 chrX:20325726-20325920 - Intragenic
ENSMUSG00000081529 UCSC
CycsP24 chr19:24852989-24854239 + Intergenic
ENSMUSG00000058927 UCSC
CycsP12 chr8:126754862-126755130 + Intragenic
N/A UCSC
CycsP13 chr8:58471674-58472136 - Intragenic
Intragenic
N/A UCSC
CycsP15 chr9:70618661-70619527 + Intragenic
N/A UCSC
CycsP18 chr11:20792311-20792578 - Intergenic
N/A UCSC
CycsP22 chr16:15866677-15867623 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_007808.5
AGACGGCGCTACCGCACGTCGGGCCGCGGACGGGCGGAACAAGTGTGGTTGCACCGACACCGGTACATAGGCGCGGGCCGGCGTGTCCTTGGGCTAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCGTGGTGTTGACCAGCCCGGAACGaattaaaaatgggTGATGTTGAAAAAGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACACTGTGGAaaagggaggcaagcataagactgGACCAAATCTCCACGGTCTGTTCGGGCGGAAGACAGGCCAGGCTGCTGGATTCTCTtacacagatgccaacaagaacaaAGGCATCACCTGGGGAGAGGATACCCTGATGGAGTATTTGGAGAATCCCAAAAAGTACATCCCTGGAACAAAAATGATCTTCGCTGGAAttaagaagaagggagaaagggcagACCTAATAGCTTATCTTAAAAAGGCTACTAATGAGTAATTCCACTGCCTTATTTATTACAAAACAAATGTCTCATGGCTTTTAATGTACACCATAATTTAATTCACACACCAAATTCAGATCATGAATGGCTAGCAATGTTTTTGTTGGACAGTCCTGATTTAAGTAAAACTGACTTGTCATAAAGTGGGTACGGTCTTTATTAAAGCAACAGTTCCAGTTGTATACATGCTACCACGGCTCTCCCTTTCTCAAGATAAGATTGGACTTAATTAGCAATGTTTTACTTTCCATAAATAGGGGCATGTCACCTCAAACCTACTAAATGGTTTTATACTTAGATTTATATAACTGGGCATATGAATATGCTTAAACACTGGGAAAATTCTATcactgtctcagaaacaagaaGACTCAAATGTGTTTCAGTTTGTGTTCACTGGCCTCTTTCAGGTCATGGCTAACCACCAGGAGGCAACTGTCTATTCTTGACAGTGCAGTTTTAATTAGAATTCCCTACATCAAGGATGTTGCCTTTTACTATTGAAAGGCATTTACTGTGGTTTATGTATGATATCAAATAAAGAGTATTTAACACTTCTTTATAGTTGATCTGCAAATTAAAATGCTTTTAGAAACAAGCAAGTTAGGCCTTTTAAATTCTCTATTTTCTAAGACTAAGTTGTAAATCAGAATTGTCCTTAAATACCCACTCAGAAACACACATAACTGGAATTCGATTAGGAATGGCACTCTTTGCTAACTTACTAGATGGAAAGATGGAAATAAAGGAAATAGTTTGTATCAGCAGAAAGAAGATAATTAAAACAACCACAGAtcgtgatcctttgattgtgctTTGTTTAATGACAGTTAACATATCTTTAGTTGTTTAAATGTTCCCTGGTATAAAGCCATGGTCTAGTGAAGGTACTAGGTGCTCTTACCTTGATATCTCGGGCAACTCCGACTACAGCCACGCTTTACCCTTCGTTCTTTGGCCAGAATGAGATCTATAAAGGTGAATAATTATGTATTAGCTGAGTGGTCCTAAATTTTATAGAGAATGGCAGGGAAATGAGTGATAGTGGTGTCTTTGTGGGGGTGAAAAGGCTGGAGAAAGACCTCATCGTGACTTCAGACGTGTAGAAGATGATTAACTGGGCCTCAGGTCAGAGGCAGCACTTTGTGACAAATCTTACTTTATACAAGAAATTGAGGACAATCTGGAAAcaagtttggaaagttttctgtaATTTGGAGTTTTGGGCTGatgggtaggaattttttttttgttgttttggacctattttgtatgtatgggtgttttctctgcatgtatatctgtgcactacACTTGAAGGCCAACCCAGGGTGTTGGATTCCTTGGGACTGGTGTTACAGCGGGATCTGCAGTGGGCGCAGTCCaggctgagtcctctggaagaacagccagtgctcttgagtcctctccagccctgataagCTTTTTACTTTGTAGGTCCTTCAGAGATAGCTTTGTAATAACACTTGATGAGTCCCAAGTTTTTGTAACAACTTTCCAGGGCACATTTTAACTAATGTGTAAAGAAATAAAGCCCTGGAATTGCCGGGTGGtgttggcatacacctttaatcccagcacttgggaggcagaggcaggtggatttctgagttcaaggccagcctggtctatagagtgagttccaggacagcctgggctacacagagaaaccctgtctcaaaaaaacaaaaaataaaaataaagccctGGACTTGTTTTCTTATATTCTggaaatgatagaaaaaaaaagtcataataaGCCGTTGAGATGAATATATAGACATTTGGCTTAAGATTTTATAACATTGGGCTTTCAATATAAATTCAAAGGGGCCTCGTTAGTGCAGCAGGTTGTGTGAGTCCTATAGTTTATAAACTCAGATTCTGTAACCCAGAAGTGGTGAAGCCATGATGACTTATTTCCTGACAGGCAACCTTTTCTGGGAGCCCAAGTAAAGGGTCCCTACTGATGACCAAACTTAGAGTTGTTATTTCTGTATCTATACCTAATACATCATCTAAGGCCTGTGTTACACAGATGGAACCTCCTGTGTTCTAAGGCTAGACTCAAGTAAGATACCCAGTGATGGAGAAGGTAAACCTGTGAGATGCAGAAAGGGGACAGTCTCTGTACACTGATTTTACAAGTCAGGAAGTGGGACCACTCTAGCTGATCTGCTTGCTCTTAGTTGCTTTGTAGGTGGCTAGTTCAGTGATACCATAAAGGAAAATCAGATGAATTTCTTCTCAGTTCCACCTGCATTCAGAATGCTTAGAAAAGCTCTACCCCATAGTCCTTCCTGTAATGGATCTTTTAGACATACTTGTCCATTACCCTGGTGTGGCTTTCAAACCCATGAAGTACATGTGGGTTGATGAAGTAGCTAATGGCTGCTGTATTTATGGCATTGACCTAGAACTAGTACCAGCCAGTTTAAGCACTTGCCTTCTGAGAATCTAGAattaatgcacataaaattcTGATGCCTTTCTGAACACTGATTTAGACAATCCCTTTGATTTTACCATGCTTCATCTGTTGAGTTTAAGTTGTCTTTTTTAGGTGGGCAGGGGCACCATCTGTCTTCCGTTACACTTACATATTCATTTTAACCACTGAAGATTGCTAAATAAAGGACATGTCGGAGT