Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Hmgn2
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name high mobility group nucleosomal binding domain 2
Also known as HMG-17|Hmg17
Coordinate chr4:133692050-133695302
Strand -
Gene summary Predicted to enable chromatin binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II and regulation of development, heterochronic. Located in nucleus. Is expressed in several structures, including central nervous system; eye; genitourinary system; heart; and lung. Used to study Axenfeld-Rieger syndrome type 1. Orthologous to human HMGN2 (high mobility group nucleosomal binding domain 2). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hmgn2

Retroname Coord Strand Genomic Region ENSG
Hmgn2P1 chr1:106367244-106368408 + Intergenic
ENSMUSG00000099604 UCSC
Hmgn2P13 chr10:113566029-113566210 - Intergenic
ENSMUSG00000112438 UCSC
Hmgn2P14 chr11:50238357-50239405 + Intergenic
ENSMUSG00000082545 UCSC
Hmgn2P15 chr12:116470419-116471566 - Intergenic
ENSMUSG00000101236 UCSC
Hmgn2P19 chr13:8339080-8340141 - Intragenic
ENSMUSG00000072421 UCSC
Hmgn2P17 chr13:43661646-43662762 - Intergenic
ENSMUSG00000113177 UCSC
Hmgn2P18 chr13:62470110-62470576 + Intergenic
ENSMUSG00000113107 UCSC
Hmgn2P16 chr13:113615704-113616876 - Intergenic
ENSMUSG00000114659 UCSC
Hmgn2P21 chr14:65159267-65160563 + Intragenic
ENSMUSG00000114686 UCSC
Hmgn2P23 chr16:22352964-22354144 - Intragenic
ENSMUSG00000116580 UCSC
Hmgn2P24 chr17:47326817-47327889 - Intergenic
ENSMUSG00000091775 UCSC
Hmgn2P25 chr17:82846590-82847771 + Intergenic
ENSMUSG00000073371 UCSC
Hmgn2P26 chr18:14625060-14626096 + Intergenic
ENSMUSG00000117607 UCSC
Hmgn2P27 chr18:35102714-35103894 - Intergenic
ENSMUSG00000118145 UCSC
Hmgn2P4 chr2:70448885-70449221 - Intergenic
ENSMUSG00000086699 UCSC
Hmgn2P2 chr2:128429308-128430090 - Intergenic
ENSMUSG00000082350 UCSC
Hmgn2P5 chr3:105998264-105999391 + Intergenic
ENSMUSG00000105051 UCSC
Hmgn2P6 chr5:46571597-46572757 + Intergenic
ENSMUSG00000067321 UCSC
Hmgn2P7 chr5:84271074-84272248 + Intragenic
ENSMUSG00000079067 UCSC
Hmgn2P8 chr7:43036304-43037384 - Intergenic
ENSMUSG00000070606 UCSC
Hmgn2P9 chr7:93846401-93847595 + Intragenic
ENSMUSG00000096033 UCSC
Hmgn2P11 chr9:22231599-22232769 - Intragenic
ENSMUSG00000094627 UCSC
Hmgn2P12 chr9:35499401-35500743 - Intergenic
ENSMUSG00000094676 UCSC
Hmgn2P30 chrX:92682193-92682885 + Intergenic
ENSMUSG00000087255 UCSC
Hmgn2P28 chrX:140652318-140653497 - Intergenic
ENSMUSG00000085466 UCSC
Hmgn2P29 chrX:159051923-159053044 - Intergenic
ENSMUSG00000082500 UCSC
Hmgn2P20 chr13:92442555-92443679 + Intergenic
ENSMUSG00000100622 UCSC
Hmgn2P10 chr8:73057951-73059140 - Intergenic
ENSMUSG00000070713 UCSC
Hmgn2P3 chr2:139017011-139018044 - Intergenic
N/A UCSC
Hmgn2P22 chr15:68748541-68749707 + Intragenic
N/A UCSC
Hmgn2P31 chrX:94413568-94414236 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_016957.3
ATGAGCGGCGACGGGAGGTGAAATCCGGTTCTAACCGGTCCGGGGCTCCCAGCGCTATAAAAACTTTATAAACCCCCCGGAGCCCGAGCAGTGTGAGGAAGCAGCGAGGACGACCCCCGGACGGAGCAAACCCGCGCGCCGCTGTATCCCCGTGCTCAGCGCCGACGTCCCCTGCCGCCACCATGCCCAAAAGAAAGGCTGAAGGGGATGCTAAAGGAGACAAAACCAAGGTGAAGGACGAGccaCAGAGAAGATCTGCGAGGTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAACCTAAAAAGGCCCCTGCGAAGAAgggagagaaggtacccaaggggaagaaggggaaagctgACGCCGGGAAGGATGCGAATAATCCTGCAGAAAATGGAGATGCCAAAACAGACCAGgcACAGAAAGCTGAAGGTGCTGGAGATGCCAAgtgatgtgtgtgcatttttgatAACTGTGTACTTCTGGTGACTGTACAGtttgaaatactattttttatcaagttttataaaaatgcagaatttcgttttactttttttttttaagctatattGTTAGCACACAGAACACTTCATTACTGGGTGGGGGAAGGATCATGTGTCAGTAACAAAATCTCTCCCAAGCTGGATTGAGGACAGAAAACCTCTTTCCCTGATAATTTTGGAAGGCTCCTGTTGGCTCCCAGGAGAGAGATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAACAATGCCTTGTGGTCTGGGGAAACTATAAATTCACTTTTATATCCTCTTCCCCCTGTACTATCAACATAGACTTAATTCCCTTAAAAACCAGAGACCTGTTGGAACCGGGCCCCCAAAATTGGTTTCCCAGTCCATTGAGTGATGGGGACTTTGCAGTGACTTCATTGAGTGTTCTCAAAAGAGCACTGGTTCCTTTTATAAAAGATTGTGGATCTTCAGATTGATAATTCTGCCTAAAAGTCAGGGTCGGCTTGTGAAAAGTTGTTAAAACAACATCCTTAATGTGAAATGTCAACCCTCACTCTAAGCTACTTCCCCCTTTTCAAAGCATTGAATGAAGACTTCATTGGGTTTTATAGtggctttctgattttggtaGTCTATACAAGAAGGGAATTTGGAAGTTCTTGTATATTGTTGATTGTCTGCCCATGTCCTGCCTGAAATACCATGATTGTTTATGAAAAGAATCTTTAATAAAGCTGGTTACAGTTAGGCTTGGAA