Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Hspd1
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name heat shock protein 1 (chaperonin)
Also known as 60kDa|CPN60|HSP-60|HSP-65|Hsp60
Coordinate chr1:55116992-55127402
Strand -
Gene summary Enables lipopolysaccharide binding activity. Involved in positive regulation of T cell activation. Acts upstream of or within T cell activation; cellular response to interleukin-7; and positive regulation of cytokine production. Located in mitochondrion; plasma membrane; and secretory granule. Is expressed in several structures, including brain; eye; and urinary system. Used to study hereditary spastic paraplegia 13. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autistic disorder; glucose intolerance; hereditary spastic paraplegia (multiple); and hypomyelinating leukodystrophy 4. Orthologous to human HSPD1 (heat shock protein family D (Hsp60) member 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hspd1

Retroname Coord Strand Genomic Region ENSG
Hspd1P12 chr6:64956150-64956343 + Intergenic
ENSMUSG00000107783 UCSC
Hspd1P14 chr8:55985470-55986332 + Intergenic
ENSMUSG00000110025 UCSC
Hspd1P17 chr9:12819530-12820668 + Intergenic
ENSMUSG00000111552 UCSC
Hspd1P3 chr1:5134520-5135193 + Intragenic
ENSMUSG00000091665 UCSC
Hspd1P1 chr1:45217226-45218165 + Intergenic
ENSMUSG00000101937 UCSC
Hspd1P2 chr1:49437942-49439955 - Intergenic
ENSMUSG00000099627 UCSC
Hspd1P18 chr11:41389503-41391738 + Intergenic
ENSMUSG00000058809 UCSC
Hspd1P19 chr12:11715538-11717115 - Intergenic
ENSMUSG00000111974 UCSC
Hspd1P20 chr12:26200351-26200971 + Intergenic
ENSMUSG00000113611 UCSC
Hspd1P21 chr14:101580924-101583098 + Intergenic
ENSMUSG00000115538 UCSC
Hspd1P22 chr15:24203591-24205662 - Intergenic
ENSMUSG00000115528 UCSC
Hspd1P23 chr16:61281377-61282282 + Intergenic
ENSMUSG00000090448 UCSC
Hspd1P4 chr2:98431378-98432101 + Intergenic
ENSMUSG00000082862 UCSC
Hspd1P5 chr3:61974841-61976017 - Intergenic
ENSMUSG00000104489 UCSC
Hspd1P6 chr3:77992898-77994771 - Intergenic
ENSMUSG00000102637 UCSC
Hspd1P8 chr4:89330396-89332886 - Intergenic
ENSMUSG00000080808 UCSC
Hspd1P9 chr4:91597645-91598071 + Intergenic
ENSMUSG00000082523 UCSC
Hspd1P7 chr4:105992879-105995025 - Intergenic
ENSMUSG00000081189 UCSC
Hspd1P11 chr6:12566134-12567292 + Intragenic
ENSMUSG00000083794 UCSC
Hspd1P15 chr8:62939386-62941562 - Intergenic
ENSMUSG00000109687 UCSC
Hspd1P16 chr8:83481930-83482354 + Intergenic
ENSMUSG00000109893 UCSC
Hspd1P24 chrX:95592229-95594233 + Intragenic
ENSMUSG00000081182 UCSC
Hspd1P10 chr5:81161717-81161977 + Intergenic
N/A UCSC
Hspd1P13 chr8:18102960-18103341 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001356512.1
GATTGGTGGCGAGGGCTCCGCGCAAGGGGGCCGACGCGGGCGGCCGGAGGCGGAAGAAAAGGGGAGCACTTTCTAGGCTTTTCCAGGCCGGCCGCCGAGGTGAAAGAACGAGCCCCCCTCCCGGAAATGACGCCACTTGACCTTTCACCCACGGGACGCGCGGGGCCTTCCGGAAGGTTCTAGAACGGACCGTGGCCCAGGAACCAGCGTAGGGCGGCGGGAGAGGGCTGAGGCCGCAGAGCTGAGGCGGCTCTGAAATGCTTCGACTACCCACAGTCCTTCGCCAGATGAGACCAGTGTCCCGGGCACTGGCTCCTCATCTCACTCGGGCCTATGCCAAAGATGTAAAATTTGGTGCGGACGCTCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCAGATGCTGTAGCTGTTACAATGGGGCCAAAGGGAAGAACTGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGGGTCACTGTTGCAAAGTCAATTGATTTAAaggataaatacaaaaatattggagCTAAACTTGTTCAGGACGTTGCCAATAACACAAACGAAGAGGCTGGGGatggcaccaccactgccactgtTCTGGCACGATCTATTGCCAAGGAGGGCTTTGAGAAGATCAGCAAAGGGGCTAATCCAGTGGAAATCCGGAGAGGTGTGATGTTGGCTGTGGATGCTGTAATTGCTGAACTTAAGAAACAGTCTAAACCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGACATTGGGAACATCATTTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTGAAGGATGGAAAAACCCTGAATGATGAGCTAGAAATTATTGAAGGCATGAAGTTTGATAGAGGATATATTTCCCCGTATTTTATTAACACATCAAAAGGTCAAAAGTGTGAATTCCAAGATGCCTATGTCTTGTTGAGTGAAAAGAAAATTTCCAGTGTTCAGTCCATTGTCCCTGCTCTTGAAATTGCTAATGCTCATCGGAAGCCATTGGTCATAATCGCCGAAGACGTTGACGGAGAAGCTCTAAGCACGCTGGTTTTGAACAGGCTAAAAGTTGGTCTTCAGGTTGTGGCAGTCAAAGCTCCAGGATTTGGGGACAATAGGAAGAACCAGCTTAAAGATATGGCTATTGCTACTGGTGGTGCAGTGTTTGGAGAAGAGGGGTTGAATCTAAATCTTGAAGATGTTCAAGCTCATGACTTAGGAAAAGTTGGGGAGGTCATTGTCACCAAAGATGATGCCATGCTTTTGAAAGGAAAAGGTGACAAAGCTCACATTGAAAAACGTATTCAAGAAATCACTGAGCAGCTAGACATCACAACTAgtgaatatgaaaaagaaaagctgAACGAGCGACTTGCTAAACTTTCAGATGGAGTAGCTGTGTTGAAGGTTGGAGGAACAAGTGATGTTGAAGTGAATGAGAAAAAAGACAGAGTTACTGATGCTCTCAATGCTACAAGAGCAGCTGTTGAAGAAGGCATTGTTCTAGGAGGGGGCTGCGCTCTGCTTCGGTGCATCCCAGCCTTGGATTCATTAAAGCCTGCTAATGAAGACCAGAAAATAGGTATAGAAATTATTAAAAGAGCACTTAAAATTCCTGCAATGACGATTGCTAAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTCTGCAGAGTTCCTCAGAAGTTGGTTATGACGCCATGCTTGGAGATTTTGTGAACATGGTGGAAAAAGGGATCATTGATCCAACAAAGGTTGTGAGAACTGCCTTACTGGATGCTGCTGGGGTGGCCTCCTTGCTAACTACAGCCGAAGCTGTAGTGACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCAATGGGTGGCATGGGAGGGGGTATGGGAGGCGGCATGTTCTAACTCCTAGAGTAGTGCTTTGCCCTTATCAATGAACTGTGACAGGAAGCTCAAGGCAGGTTCCTCACCAATAACTTCAGAGAAGTCACCTGGAGAAAATGACTGAAGAGAAGGCTGGCTGACCACTGTAATCATCAGTTACTGGTTTCCTTTGACGATATATAATGGTTTACTGCTGTCATTGTCCATGCCTACagataatttattttgtatttttgaataAAGACATTTGTACATTCCTGATGCTGGGTGCAAGAGCCATATACCAGTGTCCTGCTTTCAACTTAAATCACTGAGGCATCTCTACTGTTCTGTGAGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTCTGTGGAGGGTGGGAATGATTGTGTACAAAGTAGAGAAGTATCCAATTATGTGACAACCTTTGtgtaataaaattttgtttaaagttTC
>NM_010477.4
GAGAGCGGggggcgcgcgcgcgcacacgcggggccgcggggcggggcggggagggaGGGGACTCGGGCTCATTGCGGTGCGCGCCCAGAGCTGGGTCCCTCACTCGCCGCAGACGGCCTGCCTCGCCTCGTGCTCTCCTGCCGCCGCCCCGCAGAAATGCTTCGACTACCCACAGTCCTTCGCCAGATGAGACCAGTGTCCCGGGCACTGGCTCCTCATCTCACTCGGGCCTATGCCAAAGATGTAAAATTTGGTGCGGACGCTCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCAGATGCTGTAGCTGTTACAATGGGGCCAAAGGGAAGAACTGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGGGTCACTGTTGCAAAGTCAATTGATTTAAaggataaatacaaaaatattggagCTAAACTTGTTCAGGACGTTGCCAATAACACAAACGAAGAGGCTGGGGatggcaccaccactgccactgtTCTGGCACGATCTATTGCCAAGGAGGGCTTTGAGAAGATCAGCAAAGGGGCTAATCCAGTGGAAATCCGGAGAGGTGTGATGTTGGCTGTGGATGCTGTAATTGCTGAACTTAAGAAACAGTCTAAACCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGACATTGGGAACATCATTTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTGAAGGATGGAAAAACCCTGAATGATGAGCTAGAAATTATTGAAGGCATGAAGTTTGATAGAGGATATATTTCCCCGTATTTTATTAACACATCAAAAGGTCAAAAGTGTGAATTCCAAGATGCCTATGTCTTGTTGAGTGAAAAGAAAATTTCCAGTGTTCAGTCCATTGTCCCTGCTCTTGAAATTGCTAATGCTCATCGGAAGCCATTGGTCATAATCGCCGAAGACGTTGACGGAGAAGCTCTAAGCACGCTGGTTTTGAACAGGCTAAAAGTTGGTCTTCAGGTTGTGGCAGTCAAAGCTCCAGGATTTGGGGACAATAGGAAGAACCAGCTTAAAGATATGGCTATTGCTACTGGTGGTGCAGTGTTTGGAGAAGAGGGGTTGAATCTAAATCTTGAAGATGTTCAAGCTCATGACTTAGGAAAAGTTGGGGAGGTCATTGTCACCAAAGATGATGCCATGCTTTTGAAAGGAAAAGGTGACAAAGCTCACATTGAAAAACGTATTCAAGAAATCACTGAGCAGCTAGACATCACAACTAgtgaatatgaaaaagaaaagctgAACGAGCGACTTGCTAAACTTTCAGATGGAGTAGCTGTGTTGAAGGTTGGAGGAACAAGTGATGTTGAAGTGAATGAGAAAAAAGACAGAGTTACTGATGCTCTCAATGCTACAAGAGCAGCTGTTGAAGAAGGCATTGTTCTAGGAGGGGGCTGCGCTCTGCTTCGGTGCATCCCAGCCTTGGATTCATTAAAGCCTGCTAATGAAGACCAGAAAATAGGTATAGAAATTATTAAAAGAGCACTTAAAATTCCTGCAATGACGATTGCTAAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTCTGCAGAGTTCCTCAGAAGTTGGTTATGACGCCATGCTTGGAGATTTTGTGAACATGGTGGAAAAAGGGATCATTGATCCAACAAAGGTTGTGAGAACTGCCTTACTGGATGCTGCTGGGGTGGCCTCCTTGCTAACTACAGCCGAAGCTGTAGTGACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCAATGGGTGGCATGGGAGGGGGTATGGGAGGCGGCATGTTCTAACTCCTAGAGTAGTGCTTTGCCCTTATCAATGAACTGTGACAGGAAGCTCAAGGCAGGTTCCTCACCAATAACTTCAGAGAAGTCACCTGGAGAAAATGACTGAAGAGAAGGCTGGCTGACCACTGTAATCATCAGTTACTGGTTTCCTTTGACGATATATAATGGTTTACTGCTGTCATTGTCCATGCCTACagataatttattttgtatttttgaataAAGACATTTGTACATTCCTGATGCTGGGTGCAAGAGCCATATACCAGTGTCCTGCTTTCAACTTAAATCACTGAGGCATCTCTACTGTTCTGTGAGCATCAGGACTGTAGCGCTGTGTCACCACATGAGAGTTCAGAAGCAGCCTTTCTGTGGAGGGTGGGAATGATTGTGTACAAAGTAGAGAAGTATCCAATTATGTGACAACCTTTGtgtaataaaattttgtttaaagttT