Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpsa
Plot displaying the genomic locations of a parental gene (in chr9) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein SA
Also known as 67kDa|67lr|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8
Coordinate chr9:119956832-119961435
Strand +
Gene summary Enables laminin binding activity. Predicted to be involved in cell-cell adhesion; cytoplasmic translation; and ribosomal small subunit assembly. Located in cytoplasm; glutamatergic synapse; and nucleus. Part of small ribosomal subunit. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and hemolymphoid system gland. Used to study Diamond-Blackfan anemia and arrhythmogenic right ventricular dysplasia 5. Orthologous to human RPSA (ribosomal protein SA). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpsa

Retroname Coord Strand Genomic Region ENSG
RpsaP2 chr1:81774965-81775728 + Intergenic
ENSMUSG00000100561 UCSC
RpsaP1 chr1:163451292-163452316 + Intergenic
ENSMUSG00000102117 UCSC
RpsaP19 chr10:128612169-128613189 - Intergenic
ENSMUSG00000045055 UCSC
RpsaP20 chr11:22336302-22336909 + Intergenic
ENSMUSG00000083580 UCSC
RpsaP21 chr11:28906654-28907672 + Intergenic
ENSMUSG00000081695 UCSC
RpsaP22 chr11:32988750-32989771 - Intergenic
ENSMUSG00000081076 UCSC
RpsaP23 chr12:26535900-26536862 - Intergenic
ENSMUSG00000113059 UCSC
RpsaP24 chr12:33545994-33546923 - Intergenic
ENSMUSG00000112076 UCSC
RpsaP25 chr12:72787868-72788302 - Intergenic
ENSMUSG00000112989 UCSC
RpsaP26 chr13:14733707-14733893 + Intergenic
ENSMUSG00000113345 UCSC
RpsaP27 chr14:5515498-5516086 - Intragenic
ENSMUSG00000114202 UCSC
RpsaP30 chr16:22504034-22504943 - Intergenic
ENSMUSG00000116603 UCSC
RpsaP31 chr17:25767892-25768236 - Intergenic
ENSMUSG00000117544 UCSC
RpsaP32 chr17:77669280-77670283 - Intergenic
ENSMUSG00000117578 UCSC
RpsaP33 chr17:82717296-82718320 - Intergenic
ENSMUSG00000117438 UCSC
RpsaP34 chr18:13263663-13264680 - Intergenic
ENSMUSG00000117447 UCSC
RpsaP36 chr18:24214077-24215038 - Intergenic
ENSMUSG00000117500 UCSC
RpsaP37 chr18:42319239-42319690 - Intragenic
ENSMUSG00000117660 UCSC
RpsaP4 chr2:28367105-28368129 + Intergenic
ENSMUSG00000082895 UCSC
RpsaP5 chr2:31441925-31442094 - Intergenic
ENSMUSG00000084226 UCSC
RpsaP3 chr2:131746323-131746537 + Intergenic
ENSMUSG00000081229 UCSC
RpsaP7 chr3:21167730-21168030 - Intergenic
ENSMUSG00000106051 UCSC
RpsaP6 chr3:149778226-149779251 - Intergenic
ENSMUSG00000047676 UCSC
RpsaP8 chr4:14170063-14170977 + Intergenic
ENSMUSG00000082128 UCSC
RpsaP10 chr4:56388423-56388583 + Intergenic
ENSMUSG00000082613 UCSC
RpsaP11 chr4:59162204-59163225 - Intergenic
ENSMUSG00000082978 UCSC
RpsaP9 chr4:149226888-149227916 - Intergenic
ENSMUSG00000080746 UCSC
RpsaP12 chr5:12718932-12720756 - Intergenic
ENSMUSG00000105237 UCSC
RpsaP13 chr5:133947932-133948884 - Intergenic
ENSMUSG00000104893 UCSC
RpsaP15 chr8:5577646-5578483 + Intergenic
ENSMUSG00000109266 UCSC
RpsaP14 chr8:125508621-125508902 + Intragenic
ENSMUSG00000110550 UCSC
RpsaP17 chr9:23788088-23788521 + Intergenic
ENSMUSG00000110829 UCSC
RpsaP18 chr9:71185992-71186433 - Intragenic
Intragenic
ENSMUSG00000111181 UCSC
RpsaP41 chrX:20105636-20106617 + Intragenic
ENSMUSG00000083033 UCSC
RpsaP42 chrX:38884648-38886103 + Intergenic
ENSMUSG00000083845 UCSC
RpsaP44 chrX:60524015-60524966 + Intergenic
ENSMUSG00000083343 UCSC
RpsaP39 chrX:145302463-145302713 + Intergenic
ENSMUSG00000081197 UCSC
RpsaP40 chrX:157616406-157617381 + Intergenic
ENSMUSG00000082026 UCSC
RpsaP43 chrX:45624731-45625368 - Intergenic
ENSMUSG00000082204 UCSC
RpsaP16 chr9:107169562-107170583 - Intragenic
N/A UCSC
RpsaP28 chr14:79411759-79412642 + Intragenic
N/A UCSC
RpsaP29 chr16:14775533-14776437 - Intragenic
N/A UCSC
RpsaP35 chr18:22452055-22452999 + Intergenic
N/A UCSC
RpsaP38 chr19:15649381-15649604 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011029.4
ACGTCATTTCCGGCCGCCCGTCCTTTCGCGCTACCCGGGGACGGGTCCATACGGCGTTGTTCTTGatTCCCATCGTAACTTAAAGGGAAACTTACACAATGTCCGGAGCCCTTGACGTCCtgcagatgaaggaggaggatgtcCTCAAATTCCTTGCTGCGGGAACCCACTTAGGTGGCACCAACCTTGACTTTCAGATGGAGCAGTACATCTACAAAAGGAAAAGTGACGGTATCTACATCATAAACCTGAAGAGGACCTGGGAGAAGCTGTTGCTCGCAGCTCGAGCTATTGTTGCCATCGAGAATCCTGCTGACGTCAGCGTCATCTCCTCCAGGAACACTGGCCAGCGAGCTGTGCTGAAGTTTGCTGCTGCCACAGGAGCCACTCCGATCGCTGGCCGCTTCACACCTGGGACCTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCCACGGCTTCTAGTGGTGACCGATCCCAGGGCTGACCATCAgccactcacagaggcctcttaTGTCAACCTGCCCACCATTGCTCTGTGTAACACAGATTCTCCCCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTGGCCAGGGAAGTACTCCGCATGCGAGGTACTATCTCCCGTGAGCACCCCTGGGAGGTCATGCCTGATCTTTACTTCTACAGAGACCCAGAGGAGattgagaaggaggagcaggctgCTGCTGAGAAGGCTGTGACCAAGGAGGAATTCCAGGGTGAATGGACCGCACCAGCTCCTGAGTTCACTGCTGCTCAGCCTGAGGTGGCCGACTGGTCTGAGGGTGTGCAGGTTCCCTCTGTGCCCATCCAGCAGTTCCCCACGGAAGACTGGAGTGCACAGCCAGCCACTGAGGATTGGTCAGCAGCTCCCACAGCGCAGGCCACTGAGTGGGTTGGAGCCACCACTGAGTGGTCCTGAGCTGCTGTGCAGGTGCCTGAGCAAAGGGaaaaaagatggaaggaaaataaagttGCTAAAAGCTGTCTTATGGTCCTCACTGCAGACTGTACCTGGATTGGCATTTGGCTATACAACAGAGGCATGGTCCTACTGACATGTTTTGTGTTGAATACTTAAGCATGTGAacacatgggttttttttttttttaatgtaaaatgtagTAACACAATGTTTAGGTGGCTTTGGTGTTAGCTCTGGAGACTTCATGTGTCATCTAGGTGAGGTGTTCTTTAACACAGGGTCTCTGTTCTGTCATGCCTCATAGATCCTTCTACCTCCAGATTGGAGAGGGAAAAGGCTTATGTCACTGAACCTGGCCAGATTGGGATTTTGTGTCCCAGGAACAAAGTTAATGCTAAAAAGTTAATGCCTTGGTGAGACTGATAGTCTGATGGTGTGAATTCACAGTAAGTGGTTGGGATTGCCAGATGGAATTCCCTGAGCTGCCGTGACAGGTGGCATTGCAGAAGTGAAGGATTCAGGAATTTGAGTGTTGGGTGGGGGCCTGTGAATAGCACTTGGGCTGGGAGGGGAGACTGCTGCCCCTGAATGTCCTGGAATTCAAGGACAGTACCTGGTTAAATGTTTTTCTAGCTTTTCTAAAAAGTTTGTTAGGCCTGGCATtggcggcgcacacctttaatcccagcacttgggagtcaggcaggtggatttctggcctggtctacagagagttccaggatagccagggatacacagaaatcctgcctcaggaaaaaaccaaaaagaagtttGCTAAAAATAAGCATTTTTGCTTGATGGTATTGAAGATTGTAAGACATTAAATTGTGTCATTACTTCTCCAGGTACT