Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Atp6v0c
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ATPase H+ transporting V0 subunit C
Also known as Atp6c|Atp6l
Coordinate chr10:13537031-13543407
Strand -
Gene summary Predicted to enable ubiquitin protein ligase binding activity. Involved in negative regulation of autophagic cell death and positive regulation of ERK1 and ERK2 cascade. Located in Golgi apparatus; lysosome; and synaptic vesicle. Human ortholog(s) of this gene implicated in thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Atp6v0c

Retroname Coord Strand Genomic Region ENSG
Atp6v0cP2 chr10:90568589-90569674 - Intergenic
 N/A UCSC
Atp6v0cP1 chr1:72514234-72515239 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_130823.3
GCTCTGCGGTGCTGGTATTTAGAGCGCAGCGCCTGACTGGCGGGGTCGCCTTCGCATCCGCCGCTTCGAGAATCTTCTTTCGTCTGCTCGCTCTCTCTCCCGTCGTCCTAGCCCGCCGCCGCCTGCTGAGCTTGCCCTCTCCCCGCTTGCAGACATGGCTGACATCAAGAACAACCCCGAATATTCTTCGTTTTTCGGTGTCATGGGCGCCTCGTCCGCCATGGTCTTCAGCGCCATGGGAGCTGCCTATGGCACAGCCAAGAGTGGCACTGGCATCGCAGCCATGTCGGTCATGAGGCCAGAGCTGATCATGAAGTCCATCATCCCAGTGGTTATGGCTGGGATCATCGCCATCTACGGCCTGGTGGTTGCAGTACTTATCGCTAACTCCCTGACTGATGGCATCACCCTCTACAGGAGTTTTCTTCAACTGGGTGCTGGCCTGAGTGTGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCATTGTCGGAGATGCTGGTGTCCGGGGCACTGCCCAGCAGCCTCGACTGTTCGTGGGCATGATCCTGATCCTCATCTTTGCGGAGGTGCTTGGCCTCTACGGTCTCATCGTGGCCCTAATCCTCTCCACAAAGTAGTCTTTTTCCACCACCAGTCACAGGATAGGATGTAAAGATCACCCCTCCTCATTCCAGAAGGAACAGCCTGACACATGCACGGGCAGCTGCCCCCTCAGTAGTTGGTCTTGTAAATGTGCAGTGTCCTAGTGCCCATTGTCTGTTGCCCCGCCTTGCCCCTACTGCCCCGTGCTGTGGACATCTGGGCCCACTCATCTCCCACCCAGGCCCCTGACCAGTGACGATTTCAGCCTCTGGTCACCCCACCCATCGCCCTAGAGTGCGCCTTGTGTATAAGAATGAATTAGAGTTGTCATTTTTCTCTTCACTGGATGTTTATTTATAAAAGATTTGACCTATTCATGTGTCTGTGGAGCAGCCCTGTCTCCCAACTCTATAGTAATCATTAGTAGACTGTTGCCTTGTGGGGTTCCTGTTGCTGAGACTCCTTGGATGGAGCCACCCTGCCCCCAGCCCTGAACAGCCGGGGGAGGGTAGAGAGTTCCTCAGAGCTGGCTCCCAGCTGTGTCCAATAAAAGTTCTCGGATGT
>XM_006245898.1
CTGGAAAAAGTCACATAGGCTCTTCCATGGGCAAGTTTAAAGTGTGGTAGACCCGGTTCAGCCAAGGGTTCTGCAGTGCTGCTAAATGCCACTACTTTAACCTGAGTCTCATGCTGCAGGAGTGCCTGAGGTTTGTGAGCAGGGAACACAGGGAAAAGGAACACCGGTACTCGAACACCGGTGAGCTCCGCGCAGCCGCAGAGAAGGCGGGCTATCATTCGCTCCACCCTGTATGCTAATATGGAGCGCTACGGCCCCGCCCCTGGGGCCGATGGGCCCAAAAAGGTAGGGTTCGAGAAGACGTCTGCATGGAGCAGTGGACCAGTGAAGACCCAGGCAAGGCCGAACGTTGGGCCCCGGGCCCCGGGGGCGGGTAGCAGGGCCCATACATTGTCCAAGGGCTGCTGGAGAGCCTGGAGCCTCGCTCCCCCACCGGCGCAAAGTGGTACAGCCCATGGGGGCGTGGCCCATATCATGTGACGCGAGCGCGGCCGCCATCTTGCTCTGCGGTGCTGGTATTTAGAGCGCAGCGCCTGACTGGCGGGGTCGCCTTCGCATCCGCCGCTTCGAGAATCTTCTTTCGTCTGCTCGCTCTCTCTCCCGTCGTCCTAGCCCGCCGCCGCCTGCTGAGCTTGCCCTCTCCCCGCTTGCAGACATGGCTGACATCAAGAACAACCCCGAATATTCTTCGTTTTTCGGTGTCATGGGCGCCTCGTCCGCCATGGTCTTCAGCGCCATGGGAGCTGCCTATGGCACAGCCAAGAGTGGCACTGGCATCGCAGCCATGTCGGTCATGAGGCCAGAGCTGATCATGAAGTCCATCATCCCAGTGGTTATGGCTGGGATCATCGCCATCTACGGCCTGGTGGTTGCAGTACTTATCGCTAACTCCCTGACTGATGGCATCACCCTCTACAGGAGTTTTCTTCAACTGGGTGCTGGCCTGAGTGTGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCATTGTCGGAGATGCTGGTGTCCGGGGCACTGCCCAGCAGCCTCGACTGTTCGTGGGCATGATCCTGATCCTCATCTTTGCGGAGGTGCTTGGCCTCTACGGTCTCATCGTGGCCCTAATCCTCTCCACAAAGTAGTCTTTTTCCACCACCAGTCACAGGATAGGATGTAAAGATCACCCCTCCTCATTCCAGAAGGAACAGCCTGACACATGCACGGGCAGCTGCCCCCTCAGTAGTTGGTCTTGTAAATGTGCAGTGTCCTAGTGCCCATTGTCTGTTGCCCCGCCTTGCCCCTACTGCCCCGTGCTGTGGACATCTGGGCCCACTCATCTCCCACCCAGGCCCCTGACCAGTGACGATTTCAGCCTCTGGTCACCCCACCCATCGCCCTAGAGTGCGCCTTGTGTATAAGAATGAATTAGAGTTGTCATTTTTCTCTTCACTGGATGTTTATTTATAAAAGATTTGACCTATTCATGTGTCTGTGGAGCAGCCCTGTCTCCCAACTCTATAGTAATCATTAGTAGACTGTTGCCTTGTGGGGTTCCTGTTGCTGAGACTCCTTGGATGGAGCCACCCTGCCCCCAGCCCTGAACAGCCGGGGGAGGGTAGAGAGTTCCTCAGAGCTGGCTCCCAGCTGTGTCCAATAAAAGTTCTCGGATGTGA