Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Mtdh
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name metadherin
Also known as Lyric
Coordinate chr7:72771018-72830599
Strand +
Gene summary Predicted to enable NF-kappaB binding activity; double-stranded RNA binding activity; and transcription coactivator activity. Involved in bicellular tight junction assembly. Located in several cellular components, including apical plasma membrane; bicellular tight junction; and intercellular canaliculus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Mtdh

Retroname Coord Strand Genomic Region ENSG
MtdhP1 chr1:67362660-67365780 - Intergenic
 N/A UCSC
MtdhP2 chr7:18166220-18169533 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>XM_006241520.3
aaaaCAAAGTGCAGATGCATGTGCATACACAAAAAGGAGGGAGGAAGGGTGAGATAGGCTGACAAGTATGTCCCTGATACCAAATACAGCAAATTGAAAAAACACACACAAGATGACATGATCTTACTAAATCATTTACTTGCTAGACTATCAGAGGGACTACCATACTCACCTATGATTACTGCAATCCTCTAATTCATAAATCTGAGTGGGATAATCTAAATTGATCAGTAGAATTTCTCAGGAAACTATGACCAACACAAATAGGTGAGGTTATAAATCCTATTCCAAAACTATGAATGGAATTTGTTAATTTTTAGAGTTCATGAAGATCTCATTTTAAGGTTCTGGCCTTTATAATTTAGCCCTTAATTATAAGCGTGCAAAAAGCTTAGTAAGAGTAGTTTATTACTTATAAAACTCCAAGCCACCCATTAATCACAAAACTCATTACAATACTGATGGGTCAAAATACATGAATAGGTTTTTAGTTTGTATTTCAGTTGTTTACATGCTAATTATCACTTAATTATAGACACTGTTTCCTTACAGCAAAGGCAAAATACAAGTACTAAGGTAGTCCCCAAGCATTTGTATAATTAAGAACTGAAGAAGCGCCTCAGTTAtttttggtcctgggaatcaacgccagagccttgcatatgttcagcaagcatgttctgttactgagcgacactccacaacccACCTAGTTTCCCTCTATTGCTACATTTGACTGTTGGACAACACATGCACTCAAAAATTGCAACTTTTTGTGTCGTATAAAAGCGTAAAATAATATGCTTCTCTTGCATATAAATACAGTCTAATGGGCTTCCTCTCAATACTTCCTATTAAGGTTACAAATTAGTAGGAAAATAATAGTGCCTCCCACGGGTTTGCGGACTTTTTAATTCTGGAGCCTGACAACAGACAGCAGGAGTGAATGAGAGAACCGACGCAAACGCTGGCAAATGTTAATATGCTAGTCTGCCACGAAGAAATACTCAGATGTGAATTACACGTGCCCGTGGCCTCAGACTCCACAGAGCTCCCTCTGGAAGCATCCAACTGGCCCCTGACCTAGGGAGAAAAAGTCGGTCCACTGCACCATCACTGCAGGAAAGAGAGCGTAAAGCCAGCTCATACTCTGATAGATCTGACCGTCTTGCTCGCGCGCAGGCCTCGAACCGGAGCCCCTTCTGCACTCAGAGCGCCCGAGCCTGCAGAAGTTCCGCAGCCAGGCTTCTACTCCGGCTCCTCAAGCGGCGCGTGGCCCCAAGCCGCCAACAGCTCAAGGAGACCCCTCCAAGACCAAGTCTGCCCGGCCCCACCCATCGCACCCACGTGACCCATGCCACGCCCACAACCTCCACGTGACCCGGTCGGCCTCCGCGCGCAGCGTGGATCGCGGCCAGAGCCGCCATTGTTCCGCCGGGGGAGGACAGCGAGGCCTGGCGCTGGCGCCCCGACGCCACTTAGCGGCCGCCTCTGGAGACACTCTGTCCCCGCCGCCCCGTGTCCTCCTGGCGGCGGCGGCGTGAGGCCGACTGGAGGGAGTGGGAACCCTCGGCCCTCCCCGTGGCGGCGGCGGCCACCTATTCCCCACTCTGGAGTGAGGGGCGGCCGCGATGCGCTTGGCCTGAGGTGTCGCGGCCCTCGTCGCTTCCCACGACTGTTCCAGCGGCGTCTGTGCTCCCCGGCGTCATCCCGAGAGTCTCTGACGGGAGGGAAGATGGCTGCACGAAGCTGGCAGGACGAACTGGCTCAGCAGGCCGAGGAGGGCTCTGCCCGGCTGCGGGAGTTGCTCTCTGTCGGCCTAGGTTTTCTGCGCACGGAGTTGGGCCTCGACCTGGGGTTGGAGCCGAAGCGGTACCCGAGCTGGGTGATCCTGGTGGGCACCGGCGCTCTCGGGTTGCTGCTTCTCTTCCTCCTAGGTTACGGCTGGGCCGCTGCTTGCGCCGGCGCCCGCAAAAAGCGAAGGAGCCCGCCCCGCAAGCGGGAGGAGGTGACCCCGCCGACTCCGGCCCCCGAGGACCCAGCCCAACTGAAGAATCTCAGAAGCGAGGAGCAAAAGAAAAAGAACCGGAAGAAGCTGCCTGAAAAGCCCAAACCAAATGGACGGACTGTTGAAATACCTGAAGATGAAGTTGTTAGAACTCCCCGAAGTATAACTGCCAAGCAGCCACCAGAGACAGACAAGAAAAATGAAAAGTCAAAGAAAAATAAGAAGAAGTCAAAGTCAGATGCTAAAGCAGTGCAAAACAGTTCACGCCATGATGGAAAGGAAGTTGATGAAGGAGCCTGGGAAACTAAAATTAGTCACAGAGAGAAACGACAACAGCGTAAACGTGATAAAGTGCTGACTGATTCTGGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCATCACAGTTACCACCGAGCAACTTACAACTGCATCATTTCCTGTTGGTTCCAAGAAGAATAAAGGTGATTCTCATCTAAATGTTCAAGTTAGCAACTTTAAGTCTGGAAAAGGAGATTCTACACTTCAGGTTTCTTCAGGGTTGAATGAAAATATTACTGTCAATGGAGGAGGCTGGAGTGAAAAGTCTGTAAAACTCTCCTCACAATTGAGTGCAGGTGAGGAGAAGTGGAACTCTGTCCCACCTGCTTCTGCAGGCAAGAGAAAAACAGAGCAGTCTGCTTGGACTCAAGACCCTGGTGATACTAATGCAAATGGGAAAGACTGGGGAAGGAATTGGAGTGATCGCTCAATATTTTCTGGCATTGCTGCTTGGTCTAGTGTGGCTAGGGGAGTGAGTGCCTCTCAACAGAACTCTGCTTCTTTTGCATCTCTCACACTTAACTCTGCTGTCTCTGGATCTACTGCTGAGCCAGTTTCTCAGTCTACCACTTCTGATTATCAGTGGGATGGTAGCCGTAATCAGCCCCATATCGATGATGAATGGTCTGGGTTAAATGGTTTGTCTTCTGCTGATCCTAGCTCAGACTGGAATGCACCAGCAGAAGAGTGGGGGAACTGGGTAGATGAAGATAGAGCTTCACTTCTGAAGTCCCAGGAGCCGATTTCTAATGATCAAAAGGATTCAGATGATGATAAGGAAAAAGGAGAAGGAGCTCTTCCAACTGGAAAATCTAAAAAGAAAAAAAAGAAAAAGAAGAAGCAAGGTGAAGATAACTCTATCACCCAGGACACAGAAGACCTAGAAAAGGACACTAGAGAAGAGCTTCCAGTGAATACCTCGAAAGCCCGTCCAAAACAGGAGAAAGCTTGTTCCCTGAAGACCATGAGCACTAGTGATCCAGTTGAAGTACTCATCAAAAATAGCCAGCCTATCAAGACTCTTCCACCTGCTATCTCTGCCGAGCCATCTGTTACTTTATCAAAGGGTGACTCTGACAAGAGCTCTTCCCAAGTGCCACCGATGTTACAAGACACAGACAAACCCAAGTCAAATGCTAAGCAAAACAGTGTGCCTCCCTCACAGACCAAGTCTGAAACTAATTGGGAATCTCCAAAACAAATAAAAAAGAAGAAAAAGGCCAGACGGGAAACGTGAATTTTTTTCCTAAATTGGACATGTGTTTACAAACACTGTCTTGAAGATTATGCTGTTTATGCAATAATTTGTGAACATGTACAGAGTTTTATATAAATTTAAACCAATTTTTAAAACAAAACTGAACACAACCACCATAAAATGGAATCAAAGGAAAGTTAATTTATGAAATTAAGAGGTCAACAATACATACTACAGTGCTGGAAGACACTCGGGAGAGACTTTGCAATTGAACGAGAATGATCATAATTTAAGAATATTATCCTGGTTTTACAACAGTTCCCTGTTTACAACAGATTGTGCCCTGTTTCATCTGCAGCTGAGGAATAATGGATTCTGATTAGAGAGAAGGCTGCCTAGAAGCCAGTAGGCAAGTCCTTGGATCTTATGCACGACCTTAGACCATTTGAATCTGTTTTATGCTTAAATCAAAGTGCTTTGATTAAATGCATACCTGCCATATCTTTACCTATTTGTTGTAGCAATTTGTATTAAAAGAATCACAAGTGCAAATAAAAGGTCATTTATCATTTATTTAACTAAACTGTCTTGGTTTAGTTTACAGTTCTTTAAAAGTTCTAAATTAAAACATTGAAAAATGCAATTGACAGACACCTGTATGGCTTACAAAGTTATTTTTGATAGTCTTGCATTACTTGAATTATTCAAAGTAACAGTATATTTTAAATTAAGAAAGGTAAATATATTATTTGTTTGATACATTAAGACTGAGACTAACAGTGCTCTTGTTTATGATTTGAAAACTTTTCAGGCAAAATCCAACTTAATATTTTTCCTTTCCCTAGCAATTTTCCAGTGTCAACTCTTAGTTGCTAGTAATTTTTTACCTTAAAAATAAAGTAATTCGCAACTTTTGAGCATACGACGGAGAATGGAAAAGTAGTCAGACAGCTTTAATTGACATTGTGGAGACCTCCGGTTATCAGGAATACATTTTTTTACTGCCTTAACCTCCTGTAGTGCGTAGAATATGCATCAATTTCTTGAAGGGGATTCATGTTTTTATAAGAATTTTCATGTAACTATTGCAATTGTGGTCAAAAAAAGGAACATTTTCTGCTTGAAACTGTGTTGATTTAAATGACGTATGATCTGTCACCATTTTCAGGCACTGTGTGATTCCTAGGAAAGTGGCAGGCCTCTCTGTAACTGTTAATAGTGCATGCTCGGCCATGTACACTGTAAATAGCCTTTACCAAACGTGTTTGACAAGGACCATAATTAACATCACTTTAGTGAATTGTAATTTTAAAAAAGCCATGATTTATTGATGTGAGCGGCTTGTTTTCGTGTGGCGCCAGGAATGAACCTGTTTAAAAGCTATAACCAATGGTACTGATCTATCCATTAAATACTGTCCTTATATTTGACTGTAGTTTAATAGTATTGTCAACTAGGAAAGCTACAAGATGTAAAATGGTTTTCGTTCTGTTGAAGACTGGCCTTATTAATGGACAGCTTTCCTCAGAAGTGATTAACAACTTTTTTTATTGGGTGTTAACATCTGTTTCAGGAACATGGCAGTATGTTTACATGTTGTCAGAAGTTTTGTTTGATTGAATGGGATTTCTAAATTAACTTACTTGTTTAAATAAATTCAGAAATGGATAGCATTGTTTTTATTTGCTTCACTATTGGGGTAAATAATAGCTGATGTGCCAGGAATGGAGCCTTCAGATGGCTGCTGTGAGCTTCATGTTCCCTCAGGGGATGCCACGCTATGTCTCAAGGAGAAGTTGATAGGGAGTCTGTAATTACAGAGTGTGCCAAAAGGTCAGTGCTCACAAGTTTAATTGAACTCTCTCAACTCTACCTCACTGTTCCTTTTCCTTATAATTCTCTGGGCTAGAACAAATAAGAAACTTTATTTTTCACTTCAATGTCTCCGGATGCAATCACTTATAGGAGGTGGCACCTACACCAGGTAGCAAGAATACCGTCTTTTTGCAGAGGAATATATAATGGGGGGAAGCAGAGTGACACTGGGTGGGTCAGTGTGGAGGTGGCCTCTATGCCTGCCTTCTCTCTGGCTTGCGAGCCAGGCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAAGGAGGCAGGTATATGAGTGAAAATTAATCATTCACTGCTCTTTGCCTCTGTATAGATCTTTGTGTGGCAGGGCAGGGATTTCTTGTCACTGATCAGAGGAACTGGTTTCTGCCATCAACTCAGAAAACTCTGAGATTTAGGTAATGGTGATTAGAGAGTGGCAACAGAAGACTGGGTATTCTCTGCTGGCCGGAATGAGGGCCCCTGATGCCACCTGTTTCCCCAAAAGGCTCTCTGAAAAGCCTTTCTGTTGTGGGGCGGGGCATGGGCATGTCAGAGTTCTCCAACTGCATTGTCCCTATCTTATACCCTAAATTGAGAAACAGTTGAGAGAGTCCAAAAAGAAAGTTGAAATAAAATATCATTAATGTAATTTACCTTGTTTAATTTGTGCATGCATTTTATTGGGGAGGGGAGGTTGGAATAATTTATCTAAAACTAATGGTATTATTTCATAGGCTAATCCAGTTTGTATTTGAGTTAAAGATCCCAGAGGGTAGTAATTAATTACAGAGTTTAGTTTTTCTTAATTAAAAGCAGTCCTCTATTAATATAGTATGAAATGTCAAAATTTAGGATTTAAGTTTAAGGTCTAATGGCTATTTTAAAGTTTTTCTGTAAACTCATTGCACAAACTGGAATTGGAATTGCTTTCAAAAGACTTGGGAAATGAAAATGTGTCATGTAAGATGCACTGAGTGTTGTAAATAAAATACTGTTTTTGTTTTGTTTAAAA