Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Npm1
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name nucleophosmin 1
Also known as B23|NO38|Npm
Coordinate chr11:33102498-33113206
Strand -
Gene summary Enables identical protein binding activity; protein N-terminus binding activity; and rRNA binding activity. Involved in positive regulation of transcription by RNA polymerase II and protein stabilization. Acts upstream of or within several processes, including positive regulation of protein modification process; regulation of gene expression; and ribosome biogenesis. Located in centrosome; cytosol; and nuclear lumen. Part of large ribosomal subunit and small ribosomal subunit. Is expressed in several structures, including central nervous system; early conceptus; oocyte; and small intestine crypt of lieberkuhn. Used to study myelodysplastic syndrome. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human NPM1 (nucleophosmin 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Npm1

Retroname Coord Strand Genomic Region ENSG
Npm1P15 chr17:69007152-69007608 + Intragenic
ENSMUSG00000117274 UCSC
Npm1P1 chr2:23092552-23093996 + Intergenic
ENSMUSG00000081648 UCSC
Npm1P3 chr3:69861884-69862318 - Intergenic
ENSMUSG00000103549 UCSC
Npm1P4 chr5:110265576-110266811 - Intragenic
ENSMUSG00000081865 UCSC
Npm1P9 chr9:16941261-16942502 + Intragenic
ENSMUSG00000090602 UCSC
Npm1P18 chrX:65822027-65822462 - Intergenic
ENSMUSG00000081603 UCSC
Npm1P11 chr10:39074439-39075589 + Intergenic
ENSMUSG00000111877 UCSC
Npm1P12 chr10:56373343-56374486 + Intergenic
ENSMUSG00000112825 UCSC
Npm1P17 chr18:84676759-84678066 - Intergenic
ENSMUSG00000092056 UCSC
Npm1P5 chr5:75044015-75044675 + Intergenic
ENSMUSG00000106806 UCSC
Npm1P8 chr8:89454938-89455667 - Intragenic
ENSMUSG00000110299 UCSC
Npm1P10 chr10:27157390-27157669 + Intragenic
ENSMUSG00000112052 UCSC
Npm1P13 chr14:52876956-52877405 + Intergenic
ENSMUSG00000105159 UCSC
Npm1P14 chr14:93438651-93440402 - Intragenic
ENSMUSG00000115632 UCSC
Npm1P16 chr18:31481916-31483528 - Intergenic
ENSMUSG00000117502 UCSC
Npm1P2 chr3:37162232-37163485 + Intragenic
ENSMUSG00000082878 UCSC
Npm1P6 chr6:49400682-49401820 - Intragenic
ENSMUSG00000090624 UCSC
Npm1P7 chr8:51906334-51907619 + Intergenic
ENSMUSG00000110085 UCSC
Npm1P19 chrX:86814348-86815988 - Intragenic
ENSMUSG00000083421 UCSC

Expression

Transcript Sequences

>NM_001252260.1
GGCGCACGCGCAAAAGCGCGACTGTGCGGGGAGTGGGAGGGATCCAGAGGAGGCTCGCGGAGGCAGGACTAGCGCAGATCTCGCGAGATCTCCTGCGACCATATATACGTGCGGAGAGCCCGCGTCCTTTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCGGCTTCTCCCACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATGGACATGAGTCCTCTTAGGCCTCAGAACTACCTTTTCGTGGATAATGATGAAAATGAGCACCAGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTTACACATCGTAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTAGGGGGCTTTGAAATTACACCACCTGTGGTCTTACGGTTGAAGTGTGGTTCAGGGCCTGTGCACATTAGTGGACAGCATCTAgtagCTGTAGAGGAAGATGCAGAgtctgaagatgaagatgaggaggaCGTAAAACTCTTAGGCATGTCTGGAAAGCGATCTGCTCCTGGAGGTGGTAACAAGGTTCCACagAAAAAAGTAAAACTTGATGAagatgatgaggacgatgatgAGGACGATGAGGATGATGAGGAtgatgatgatgatgattttgatgaagaggaaactgaagaaaaggtccCAGTGAAGAAATCTGTACGAGATACCCCAGCCAAAAATgcacaaaaatcaaaccaaaatggAAAAGACTTAAAACCATCAACACCGAGATCAAAGGGTCAAGAGTCCTtcaaaaaacaggaaaagactcCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAGGCAAAAATGCAAGCAAGTATAGAAAAAGGCGGTTCTCTTCCCAAAGTGGAAGCCAAGTTCATTAATTATGTGAAGAATTGTTTCCGGATGACTGACCAGGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAATCTCTTTAAGAAAAGGGTTTAAACAGTTTGAAATattctgtcttcatttctgtAATAGTTAATATCTGGCTGTCCTTTTTATAATGCAAAGTGAGAACTTTCCCTACTGTGTTTGATAAATGTTGTCCAGGTTCACTTGCCAAGAATGTGTTGTCTAAAATGCCTGTTTAGTTTTCAAGGATGGAACTCCACCCTTTACTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACATAGTAATAGTGGTCAGATGTGGAAATGGTAGGGAGACAAATATACATGTGAAATAAACTCAGTATTTTAATAAAGTAGCACTGTTTCTA
>NM_001252261.1
GGCGCACGCGCAAAAGCGCGACTGTGCGGGGAGTGGGAGGGATCCAGAGGAGGCTCGCGGAGGCAGGACTAGCGCAGATCTCGCGAGATCTCCTGCGACCATATATACGTGCGGAGAGCCCGCGTCCTTTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCGGCTTCTCCCACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATGGACATGAGTCCTCTTAGGCCTCAGAACTACCTTTTCGGCTGTGAACTAAAGGCTGACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCACCAGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTTACACATCGTAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTAGGGGGCTTTGAAATTACACCACCTGTGGTCTTACGGTTGAAGTGTGGTTCAGGGCCTGTGCACATTAGTGGACAGCATCTAgtagCTGTAGAGGAAGATGCAGAgtctgaagatgaagatgaggaggaCGTAAAACTCTTAGGCATGTCTGGAAAGCGATCTGCTCCTGGAGGTGGTAACAAGGTTCCACagAAAAAAGTAAAACTTGATGAagatgatgaggacgatgatgAGGACGATGAGGATGATGAGGAtgatgatgatgatgattttgatgaagaggaaactgaagaaaaggtccCAGTGAAGAAATCTGTACGAGATACCCCAGCCAAAAATgcacaaaaatcaaaccaaaatggAAAAGACTTAAAACCATCAACACCGAGATCAAAGGGTCAAGAGTCCTtcaaaaaacaggaaaagactcCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAGGCAAAAATGCAAGCAAGTATAGAAAAAGCGCATTGAACATTCCTGGGCACTACTGGTAAATTAAGCCCAAAgatggggaaagaggaaaaggagaaacaaataTAGTACCATCAACAATCCAGACATCTCAATCCCCTTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTTTCctaaagcatttttcttttacttttgtgatGCAGAAAACTACTTCTCTACCACTTGTGCATATGCCTCATTTCTTTGACCATGTTTTAACCTTTGTATCCTTAGCTACTctcaataaatttttaaatgaatcaa
>NM_008722.3
GGCGCACGCGCAAAAGCGCGACTGTGCGGGGAGTGGGAGGGATCCAGAGGAGGCTCGCGGAGGCAGGACTAGCGCAGATCTCGCGAGATCTCCTGCGACCATATATACGTGCGGAGAGCCCGCGTCCTTTCCTTGGCGTGATTCCGTCCTGCGCGTCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCCGTCCGGCTTCTCCCACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATGGACATGAGTCCTCTTAGGCCTCAGAACTACCTTTTCGGCTGTGAACTAAAGGCTGACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCACCAGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTTACACATCGTAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAACCAACAGTTTCCCTAGGGGGCTTTGAAATTACACCACCTGTGGTCTTACGGTTGAAGTGTGGTTCAGGGCCTGTGCACATTAGTGGACAGCATCTAgtagCTGTAGAGGAAGATGCAGAgtctgaagatgaagatgaggaggaCGTAAAACTCTTAGGCATGTCTGGAAAGCGATCTGCTCCTGGAGGTGGTAACAAGGTTCCACagAAAAAAGTAAAACTTGATGAagatgatgaggacgatgatgAGGACGATGAGGATGATGAGGAtgatgatgatgatgattttgatgaagaggaaactgaagaaaaggtccCAGTGAAGAAATCTGTACGAGATACCCCAGCCAAAAATgcacaaaaatcaaaccaaaatggAAAAGACTTAAAACCATCAACACCGAGATCAAAGGGTCAAGAGTCCTtcaaaaaacaggaaaagactcCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAGGCAAAAATGCAAGCAAGTATAGAAAAAGGCGGTTCTCTTCCCAAAGTGGAAGCCAAGTTCATTAATTATGTGAAGAATTGTTTCCGGATGACTGACCAGGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAATCTCTTTAAGAAAAGGGTTTAAACAGTTTGAAATattctgtcttcatttctgtAATAGTTAATATCTGGCTGTCCTTTTTATAATGCAAAGTGAGAACTTTCCCTACTGTGTTTGATAAATGTTGTCCAGGTTCACTTGCCAAGAATGTGTTGTCTAAAATGCCTGTTTAGTTTTCAAGGATGGAACTCCACCCTTTACTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACATAGTAATAGTGGTCAGATGTGGAAATGGTAGGGAGACAAATATACATGTGAAATAAACTCAGTATTTTAATAAAGTAGCACTGTTTCTA