Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Pabpc1
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name poly(A) binding protein, cytoplasmic 1
Also known as PABP|Pabp1|PabpI|Pabpl1|ePAB
Coordinate chr15:36595902-36609825
Strand -
Gene summary Predicted to enable RNA binding activity and protein C-terminus binding activity. Involved in gene silencing by RNA; positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; and positive regulation of nuclear-transcribed mRNA poly(A) tail shortening. Located in cytoplasm and synapse. Is expressed in several structures, including central nervous system; early conceptus; gonad; gut; and sensory organ. Orthologous to several human genes including PABPC1 (poly(A) binding protein cytoplasmic 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pabpc1

Retroname Coord Strand Genomic Region ENSG
Pabpc1P5 chr12:67391963-67392502 - Intergenic
 ENSMUSG00000113364 UCSC
Pabpc1P6 chr17:26488317-26489799 + Intragenic
 ENSMUSG00000089764 UCSC
Pabpc1P1 chr3:59338969-59341259 + Intergenic
 ENSMUSG00000102550 UCSC
Pabpc1P2 chr6:131857628-131858255 + Intergenic
 ENSMUSG00000107983 UCSC
Pabpc1P3 chr10:46389357-46389805 - Intergenic
 N/A UCSC
Pabpc1P4 chr11:109063444-109063847 - Intergenic
 N/A UCSC
Pabpc1P7 chr17:9886648-9887080 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_008774.3
CCCCTTCTCCCCGGCGGTTAGTGCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCGGAACacacatttattattaaaaaatccaaaaaaaatctaaaaaatcctttgaaaaaacccaaaaaaaatttacaaaaaaatccGCGTCTCCCCCGCCggagacttttattttttttcttcctcttttataaAATAACCCGGTGAAGCAGCCGAGACCGACCCGCCCGCCCGCGGCCCCGCAGCTCCAAGCAGGAACCCAGAGACCGAGGCCTTCCTGCCGCCCGGACCCAGCACCGCCAGCCTCGCTCCCCCGGTTCCACGGCCGTTGAGTACGCGTCGATTCCGGTTGAATTTTGTCCCTCTGCGCTCGCCCCCGCTCCCCTCCCCCCGGCTCCGTCCCCCGGCCCCGCACTCGCTCtcctcctctcacgggaaaggtcgCGGCCTGCGGCCCCGCGGGCAGCCGTGCCGAGATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCTCTGTACGTGGGGGACCTGCACCCCGACGTGACCGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCTACGCGTACGTGAACTTCCAGCAGCCGGCGGACGCGGAACGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAacatattcattaaaaatttgGACAAATCCATCGACAATAAAGCACTATATGATACGTTTTCTGCGTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATGAAAATGGCTCCAAGGGCTATGGATTTGTACACTTTGAAACACaggaagcagctgaaagagctaTTGAAAAAATGAATGGGATGCTTCTAAATGATCGTAAAGTGTTTGTTGGACGATTTAAATCTCGGAAGGAACGAGAAGCAGAGCTTGGAGCCAGGGCAAAGGAGTTCACCAATGTTTACATCAAGAACTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGAACTCTTTGGCAAGTTTGGGCCTGCCTTAAGTGTGAAAGTAATGACAGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATGCGCAGAAAGCTGTGGATGAGATGAATGGGAAGGAGCTCAATGGAAAACAGATTTATGTTGGACGAGCTCAGAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAGCAGATGAAGCAAGATAGGATCACCAGATATCAGGGTGTGAACCTTTATGTGAAAAATCTTGATGACGGGATTGATGATGAGCGTCTCCGGAAGGAGTTTTCTCCGTTTGGTACAATCACCAGTGCAAAAgtAATGATGGAGGGTGGGCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCATCCCCTGAAGAAGCCACTAAAGCAGTTACAGAGATGAATGGTAGAATTGTGGCCACGAAGCCACTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTCACTAACCAGTATATGCAGAGGATGGCAAGTGTACGAGCTGTGCCCAACCCCGTGATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAGAATATGCCCGGTGCTATCCGCCCAGCTGCTCCTAGACCACCATTTAGTACGATGAGACCAGCTTCCTCACAGGTTCCACGAGTCATGTCAACACAGCGTGTTGCTAACACATCAACACAGACAATGGGTCCACgtcctgcagctgctgctgctgcagccacTCCTGCTGTCCGCACCGTTCCCCAGTATAAATATGCTGCGGGAGTCCGCAATCCCCAGCAACATCTTAATGCACAGCCACAAGTTACCATGCAACAGCCTGCTGTTCATGTGCAAGGTCAAGAACCTTTAACTGCTTCCATGTTGGCATCTGCGCCCCCGCAAGAGCAGAAGCAAATGTTGGGTGAACGGCTGTTTCCTCTTATCCAAGCCATGCACCCTTCTCTTGCTGGTAAAATCACTGGCATGCTGTTGGAGATTGATAACTCAGAATTACTTCACATGCTCGAGTCTCCAGAGTCTCTCCGCTCAAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCGAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACTGGTGTTCCAACTGTCTAAATTGATCAGGGACCACGAACAGAAACTCGTGCTTCACCgaagaaaaatatcttaaacatcgaaaaatttaaatattatgaaaaaaaacattgcaaaatataaaataaataaaaaaaggaaaggaaactttGAACCTTATGTACCGAGCAAATGCCAGGTCTAGCAAACAGTGCTAGTCCTAGATTActtgatttaaaacaacaaaaaaatacaaaaaaatagtaaaatataaaaacaaattaatgttTTATAGACCCTGGGAAAAGAATTTTCAGCAAAGTACAAAAATTTAAAGCAttcctttctttaattttgtaattCTTTACTGTGGAATAGCTTGGGACATCAGCTCTGTTTTAAGGAGCAGAACTGATGACTGAGCAAGGAAACGTAATTTGGATTATAAAATTCTTGCTTTAATAAAAATTCCTTAAACAGTAGA