Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Pafah1b1
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
Also known as LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha
Coordinate chr11:74564775-74615210
Strand -
Gene summary Enables identical protein binding activity; microtubule binding activity; and phosphoprotein binding activity. Involved in several processes, including cortical microtubule organization; establishment of planar polarity; and inner ear development. Acts upstream of or within several processes, including cytoskeleton organization; nervous system development; and transport along microtubule. Located in several cellular components, including centrosome; perinuclear region of cytoplasm; and stereocilium. Part of microtubule associated complex. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; nervous system; and sensory organ. Used to study Miller-Dieker lissencephaly syndrome and lissencephaly. Human ortholog(s) of this gene implicated in lissencephaly and lissencephaly 1. Orthologous to human PAFAH1B1 (platelet activating factor acetylhydrolase 1b regulatory subunit 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pafah1b1

Retroname Coord Strand Genomic Region ENSG
Pafah1b1P1 chr3:96314724-96315204 - Intergenic
 ENSMUSG00000097041 UCSC
Pafah1b1P2 chr7:7064982-7066932 - Intergenic
 ENSMUSG00000109177 UCSC

Expression

Transcript Sequences

>NM_013625.4
ggtGACGTCAGGGCGTTGGGGCAGCTCCTGTGACAGACGGAGCTGGAGCGGCGGGGCGGCGGCGGAGTCCGGCGGCCGAGATAGCGAGTGAGGGAGCGAAGGAGCAGCGAGCCGAGAGTCCAGGGAGCGAGGAGGACCCGGAGGGGAGCGCTCAGGCGCGAGCGAGAGGACGAGCGAACGCTGGGCTAGGGCTCGAGCCCCGGAACGGCCGAGGAGCCCGCCCgcggccctcccctccccctccccgggACCGGGCCCAGCGCGccatcctccccctccctccctccctccctccttcctcccttccctctccctccccctcccccgctggTGGATGGGAGTGAAGGACGGAAGAGGCCCTGCGGAGGCGGTGGTGCAGCGCTCCGgtgGAATGAACCTTACTTGTTGACTGGTTGCTGATTGGATTCActtgaaaaaaagaatcatttttcccTCTGTGGAAGCCACATAGTGGCATATTTAATTCAAATCCAGGGATCACaacttttgatttttctggagggACATACCACTATATCAAATAAGCTTGACATTACAGCCAAAATGGTGCTGTCCCAGAGACAACGAGATGAACTaaatcgAGCTATAGCAGATTATCTTCGTTCAAATGGCTATGAAGAGGCATATTCcgtttttaaaaaggaagctgAACTAGATATGAATGAAGAATTAGATAAGAAGTATGCTggtcttttggaaaaaaaatggacatcTGTTATTAGATTACAAAAAAAGGTAATGGAATTAGAATCAAAACTAAATGAAGCAAAAGAAGAATTTACGTCGGGTGGTCCTCTTGGTCAGAAACGGGACCCAAAAGAATGGATTCCCCGTCCACCTGAGAAATACGCATTGAGTGGTCATAGGAGTCCAGTTACTCGAGTCATTTTCCATCCTGTGTTCAGTgttatggtctctgcttcagaggATGCTACAATTAAGGTGTGGGATTATGAGACTGGAGATTTTGAGCGAACTCTCAAGGGCCATACAGACTCTGTACAGGACATTTCCTTTGACCACAGTGGCAAGCTTCTGGCTTCCTGTTCAGCAGATATGACGATTAAATTATGGGATTTTCAGGGTTTTGAATGCATCAGAACCATGCACGGTCACGATCACAATGTCTCTTCAGTAGCCATCATGCCTAATGGAGATCATATAGTGTCTGCCTCAAGGGATAAAACTATAAAGATGTGGGAAGTGCAAACTGGCTACTGTGTGAAGACATTCACAGGACACAGAGAATGGGTACGTATGGTGCGGCCAAATCAGGATGGCACTCTGATAGCCAGCTGTTCCAATGACCAGACTGTGCGTGTGTGGGTTGTAGCAACAAAGGAATGCAAGGCTGAGCTCCGAGAACATGAACATGTGGTGGAATGCATTTCCTGGGCTCCAGAAAGTTCATATTCTTCCATCTCTGAAGCAACAGGATCTGAGactaaAAAAAGTGGCAAGCCTGGACCTTTCTTGCTATCTGGTTCCAGAGACAAAACTATTAAGATGTGGGACGTCAGTACTGGCATGTGCCTTATGACTCTTGTGGGTCATGATAACTGGGTACGTGGAGTTCTGTTCCATTCTGGGGGGAAGTTTATTTTGAGTTGTGCTGATGACAAGACCCTCCGTGTATGGGATTATAAGAACAAGCGATGCATGAAGACCCTCAATGCGCATGAACACTTTGTTACCTCCTTGGattTCCATAAGACGGCACCCTATGTGGTTACTGGCAGTGTAGATCAAACAGTAAAGGTGTGGGAGTGCCGTTGATTGAGTCACATTTGGttcttcctcccttttttcctctGGATGCACTCTGATGATACCATGGTTACCCCATTTGAGCTCTGTTTAAATAAATATTGTCCTTTCATGTAAATTATTCTGGATGTAGATTGAACTTATTAAATGTTACACACAAAGTATTCATGCATGGTGAATCCAAATTGTATACTGTAAATTTACATATGTTGTCTAGAAGTACCATAGGGTTTAaaaacctgggctggcattggtcACACCAGGCCTACAAGGGCAGAAGTTAAATAAATTGAACTAGGGCACTAAACTGAATAGTTGACAGTGTCATTTTATGTTGGATTATTAATTACTGTTTTTCTTCCTGCTATCTGTTGGTGCCTGACTTGATGGCCTCATTTTGGGGAAAGTGGTGGTTATTAGGGCTTTTTCTGAAATGTGTATCTATGTAACATCACTTAAGTGTGCTTACTAAATCTTTAAGGGTGTTAGATAATAAGACTGCAATTCAGAATCTTTGCTCCATCTGTGTAATGGGGATTACACATGAAGTTTTTGTCATGACCCCTTTGCCAAATCAATAGGATATGTTTGTTTTGGCAGCCTATCAAGCAAAGGCTAGTGGTTTATTTATGTAAGAAAATGATCGTAATTCTCAAGAAAAATCTCAGCAGCTAATAGTGAATCCTTTTTCATTTGGGTCTTACTGCTTTgtaaacaggtcaggaagcactGTCCTACTTTAGGCTTCTCTTCACACTAGACATGCGAGTTGTATTCTCCAGACTGTTGGACTGTGTAGTGATGTGACTCCCCAGTAGAATTTGATCTTCCCATTGAGTGTTATGGTACAGATCACTATGTGTTTATGATGTTTTTAGGGATGTGCAATGTGCATGTCAGAATTATGAATGCTGACAAAGCTGGGTGCGCATTTTAAAGGAGTGGAAGGAACAGTttccaacatgaccctgataacAATTCGAACTGTTTCACTTACAAGCTATAAAAAAAAGTGACAGGGTGTAATGAAGCGTGCATAGAatatactgggttttttttttctcatgttttgTTTATATGTAAATGTTTATAAGTATATGGGCCTATCTGTAAGTGgatatgtctatatatgtatatcacacacatataaccTCCATGTTGTTGGGTCTTAAGTTTTTGAAGAAGTGCTAAAACTTACGCATAGAGTAAATCTTGCTGGGGAACACCAACCACAGCCATGCTAAACTCTTCTGCTGTTTCTGACTCTGAGGAGCTTTTCTAAGAGAAAGTCACTTCCTTTGTTCTCCCCTCTAATGTGGCCAGTCACCATGTTACGCATTCCTCATAGGCTGTATATTTTGATCCAGAGTTTCTACAGTAGGTTTAAGAGAATTTTGCCCATGACTTTTGGAACACTATTCCATTgtcaatttttaataaagaatttaTCACCTAGCTaatcaacttttttttctttttaagaaaatcaatTTGAAAGGTTAACAGAAACAATGACATAACAGTGACAGTCTAacaatgataattttttttttctggactgcATTTTATTCGTTTGtataatagattttttaaaaatccctttaaGTATTGAATGGAAATTTGGTTCCTGAAAGGACAAAGGGTGAGAATTAATGTCCTGTAGATATACACAAGAGATTAGGCTCTGACAGAAGCTCACTGTCTAGCttgtgtgcttttgtttgttcacttgtttGTTCTTAATATTCCTCAGAGATTTCTCTAGAAAGGAAAAGTGTTTTGAGAATTAAGTGGTTATTTTTGAGGACAAAAACTCCATCGTGACTCCCATAAACAACACTGTAGGTTGGCTTTTAGGACAACATTGCCTCACAGCCCTGCTTACATTAAGAAGTCTTTTTCTCCTAGCTGTTCTGACTGGATTTTTCTCCAAAAGCTATAGAAAATACCTTCGTTCTCATTTGCTGCTATTTCCTGTCCTATTTCAAGAATATAAATACATAGAAATGGTGCATCTTAacatttgtttgtatgtgttaAAATGTCTTGTTTTTTAATTCAGTTTTAGCATGTAGCAACATGAATTGTTTAAGGGTAAGCCACAACATCTAGACATCAttcatagaaacaataaagaatggtACCAATGTAGAGGAGCAAAGCTGCTGGGTTTCCTCCCCTGCAGCAGTGACTCACTGACAACGGAGGAGAGAGTGCTCTGTAACAAAGCTGTCCTTACTTGGGAGAATGCCACAGCCTGCTGCTTAGCTGAGTTACCAGACATCATCCATTTAAGCAGCAGAAAACATTGAATCTCAGGGATGGTCCACAGCTGGATCCAAACTTAACGAGCCCTGTTTGAATAATGAAGGGTGGCGGGGCAACATCCACATCTGGCATCGGATTTGCAAAGGTTTCTCACACTGTTGTTTGACACTGCCCTGTTGATGCCCTTACTCTTATGTTACTGTTTTCTCTGTCTGCTGTCTAACCCTGTGCCTTGCCTGGGATAAGGACAATGATAAAGTTACTGGTTTGGGTTGTAAGTAGAGGACTTTATGAATTGGTTAGCGGTTCACTGCTGCTTTGTTACTTTCTTGAGTCAGATTGGCTGCTTACTAAATAAAAAGCTGATAGAATTGTGTACTCGGATGGTTGTTGATTGTGTGTGTAAACAGACATTCCAGTGCCACCTATAGCACAGCGTGCCCAAGAAGTCCTAACCGCATGGAGAGTGCAAGCTGCAGGTTGGTTTGTGTAGACATGACCTGAAGAATAGTTGCTTTTCACATGACATCTTGCACTTTAGGAGACTAAGACCGTcctgttctgtctgcatgtggtGTGACCAATGGTGTGCTCAGAGCACTACCCACAATCACTAGTATTAGCAAGCCGTCCCGGGCCGTGATGCACTATTAGTCCTTTGGAAGCTTTGGCTTTAGGCTCACCAAGCCCAGTCTCCTGTTTGCCTCTTTCTGTTCTTTGTGAACTTCCAGATAATACCACTcactaaagtttatttttttgttgtttgttttttaatttaaaagaaaaaaactatttaaaaataaggaCATTTTGTTTGTTGACAGTGGTGGCTTGATAATCCTTAAGCAACAAGTTGAAATAGAAGGAAAAGGCACTTGAAAAGGTTACTCTTCCTGTCCAGctgtatataaacccagtgtGTTGATTAATCTAGATGGTGCAAAAAGGAATGTCATGGTAGACAAGCAACATGGGCAAAATTGCAAgaaaggttttgggttttttccaGTGGGCTGGGTTGGGTGGGATGGGGTAAGCTGGACTCACAAGTCACGACTGGACGGGCCTTTTTATCCTTTCACTGTATCATGTAAGTAGCTGCTTTCTTGCCTGCTTATCCTTCAGGCATCCCCAAAGCTCACTCTGAAGACGTTAGAAATAAACACAAACTCTACGAGTTAGAAGCCGGTCCTGACACTGACATGAAGGCAAACATTGATTTCATATGAACGTTGCAGAGGTGGTCATTGGAGAAAACAGTTCCCAGATTGTTAAGAGTTCACCGAAGATAtcgacaaaattttaaaaatcagtaaaggAATGTATATAATATTGCTCTTGTGTTTTACAGTAAGATTTGTTGCTCTCAGACTGTGTAAAACAAAATTTATCCATGTTTTCTGCATATTAAAAATCTTATTGTACCAATTGGTAAACTATTAAATGCCTATAAAACTA