Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Ptbp1
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name polypyrimidine tract binding protein 1
Also known as HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB
Coordinate chr10:79690266-79700269
Strand +
Gene summary Enables RNA binding activity. Involved in negative regulation of mRNA splicing, via spliceosome and negative regulation of neuron differentiation. Acts upstream of with a negative effect on gene expression. Acts upstream of or within neurogenesis and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; liver; and sensory organ. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ptbp1

Retroname Coord Strand Genomic Region ENSG
Ptbp1P3 chrX:5773030-5773580 + Intragenic
 ENSMUSG00000081486 UCSC
Ptbp1P1 chr13:3187413-3190163 - Intergenic
 ENSMUSG00000113651 UCSC
Ptbp1P2 chr15:92867808-92869245 + Intergenic
 ENSMUSG00000116242 UCSC

Expression

Transcript Sequences

>NM_001283013.1
TTTCCGTCTTCCGTCTTGACTGACGGCCGTCCCGCCCAACAGCTGTCTGCTGTCTGGATGCGTTTCGCCCTTGGAGTAACCTTTTGACCAATAGAAGGCCCTGGCGGGGGCAGGCGGGGTTGACCACGCCCACAGACCGCAGCGGGAACCAATGAGGATCGCGCGCGGGGGACGTGTGCGGGCGTCTCCGCCATCTTGTGAGTCTATAACTCGGAGCCGTTGGGTCGGTTTCTGCTATTCCTGCGCCTCCGCTCCGTTCCCCGCGGGTCTCTTCCGTGTGCCATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGGCCCCTTCATCATGAGCAGCTCtgcctcagcagGGCTGCCCTTTGGAAAGGTTACCAACCTTCTCATGCTGAAGGGGAAGAACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAACACTATGGTTAACTACTATACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAGAGCTCAAGACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCAGTCTGGAAACCTGGCCTTGGCAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGCCCAGTGCTCAGGATCATTGTGGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCTCTAAGTTTGGCACCGTCCTGAAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAATGTCAAGTACAACAATGATAAGAGCAGAGACTACACTCGACCTGACCTGCCCTCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAGCAGCCTTTGGCCTCTCTGTCCCTAATGTCCATGGAGCCTTGGCCCCCCTGGCCATCccgtctgctgctgctgctgctgcggccaGCCGCATTGCCATCCCAGGGttggcaggtgctgggaattctGTCCTTTTGGTCAGCAATCTGAACCCTGAGAGAGTCACACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAATAAGAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCACGGGAAGTCAGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGCTGCCTCGGGAGGGTCAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCCCCGCTGCACCGCTTCAAGAAACCAGGCTCCAAGAACTTCCAGAACATCTTTCCACCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGACGACCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGATTGAACTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAGGTGCCTGTGGGCCTGCATCAGCTTCCACCATTCCAGAAAAGCCACTTTAAAAAGCAGCTGAAGTGACCTTACAGaccagagattttatttttttaaagagagatcagtttacctgtttttaaaaaaattaaatctagcCCACTCTGCAGTGGCAGGAAATGGCTTGGACCACAGAGGCCCAGTCAATCCCAGCACCATGCCTTGAGGGGCTCAGGCGTGAGGCCACAGCGGTGCCCCAAACATAGCCGCTTTCTGTGCCTTACAAACCAGCGTGCCTCATGGCCGTACACCCACCCTCTAAGGCCACCAGTTGTCTCTAGACCTGCAGGTGAGCCAGGTGGCCTATACATAGGCTCCCCAATGCTGTGCAAGAGCTGGGGCCACTCCCCTACACCCTTATAATCAAGTGACATGATTCTCCCATGTCCCTGGCCAGCCCGGAGGGTCCAGGCCATCCTCAGCTGCCGAGCCTCATTGTGACCTTTGTATTCTATTCCGTGTGGTCACAGACACCTGTGCCTAGCAATATTTCCACTTGACCAAATACCCGAATCTTTTCCATTTATATGCAAGAGATATAGTTTTAAGTAACTTTTTATAGCAATGATacaattgtatgtgtgtattctgagcttctatgTCCCCTGAGCTCCTTCCAGTGACCAACTTGCAGGTGGGCCCAGGCCAGGGCTGGAGAAAAAGCTCTGAGACTTGTGGGTTTCTACCTTCAAAATTTTGGACCAAAGTTTAGCTTTCTGCCCGCCTCTGACTGTGCCCAGTTGAGGGGCTGACCTCTAGGCCTTAATGTCCTCCTGCACAGCCACCTCTATCCTAGCCTGTTCCTGTGGGAGGGGTTCCCTGCACCCTGGTTCTGTGGAAGGCGTGGAAGAGTgtaaatatttatgattttataCCTGTGGGGCTGAGGCGGTGCAGCAGTTTTTTATGGTGACAGATGTATATTTTGGTAACGACTACAGGCTCAGTATTGTCCTGGGGCCAGCCCTGGCCACATCTACCCCATCCCAGATGGTGTattggggaagggggggggggctttccaTTAAAGCAGTTTTATAACCTCTGTCTTCCCTGAGCCCTTCATTCTGAgctgtaggccaggctgggccTGGATTCAATAAACACCTGTGTCTTACA
>NM_008956.3
TTTCCGTCTTCCGTCTTGACTGACGGCCGTCCCGCCCAACAGCTGTCTGCTGTCTGGATGCGTTTCGCCCTTGGAGTAACCTTTTGACCAATAGAAGGCCCTGGCGGGGGCAGGCGGGGTTGACCACGCCCACAGACCGCAGCGGGAACCAATGAGGATCGCGCGCGGGGGACGTGTGCGGGCGTCTCCGCCATCTTGTGAGTCTATAACTCGGAGCCGTTGGGTCGGTTTCTGCTATTCCTGCGCCTCCGCTCCGTTCCCCGCGGGTCTCTTCCGTGTGCCATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGGCCCCTTCATCATGAGCAGCTCtgcctcagcagCCAATGGAAACGATAGCAAGAAGTTCAAAGGTGACAACAGGAGCGCAGGAGTCCCTTCCAGAGTCATCCATGTCAGAAAGCTGCCCAGCGATGTCACTGAGGGCGAGGTCATCTCCCTAGGGCTGCCCTTTGGAAAGGTTACCAACCTTCTCATGCTGAAGGGGAAGAACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAACACTATGGTTAACTACTATACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAGAGCTCAAGACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCAGTCTGGAAACCTGGCCTTGGCAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGCCCAGTGCTCAGGATCATTGTGGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCTCTAAGTTTGGCACCGTCCTGAAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAATGTCAAGTACAACAATGATAAGAGCAGAGACTACACTCGACCTGACCTGCCCTCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAGCAGCCTTTGGCCTCTCTGTCCCTAATGTCCATGGAGCCTTGGCCCCCCTGGCCATCccgtctgctgctgctgctgctgcggccaGCCGCATTGCCATCCCAGGGttggcaggtgctgggaattctGTCCTTTTGGTCAGCAATCTGAACCCTGAGAGAGTCACACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAATAAGAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCACGGGAAGTCAGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGCTGCCTCGGGAGGGTCAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCCCCGCTGCACCGCTTCAAGAAACCAGGCTCCAAGAACTTCCAGAACATCTTTCCACCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGACGACCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGATTGAACTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAGGTGCCTGTGGGCCTGCATCAGCTTCCACCATTCCAGAAAAGCCACTTTAAAAAGCAGCTGAAGTGACCTTACAGaccagagattttatttttttaaagagagatcagtttacctgtttttaaaaaaattaaatctagcCCACTCTGCAGTGGCAGGAAATGGCTTGGACCACAGAGGCCCAGTCAATCCCAGCACCATGCCTTGAGGGGCTCAGGCGTGAGGCCACAGCGGTGCCCCAAACATAGCCGCTTTCTGTGCCTTACAAACCAGCGTGCCTCATGGCCGTACACCCACCCTCTAAGGCCACCAGTTGTCTCTAGACCTGCAGGTGAGCCAGGTGGCCTATACATAGGCTCCCCAATGCTGTGCAAGAGCTGGGGCCACTCCCCTACACCCTTATAATCAAGTGACATGATTCTCCCATGTCCCTGGCCAGCCCGGAGGGTCCAGGCCATCCTCAGCTGCCGAGCCTCATTGTGACCTTTGTATTCTATTCCGTGTGGTCACAGACACCTGTGCCTAGCAATATTTCCACTTGACCAAATACCCGAATCTTTTCCATTTATATGCAAGAGATATAGTTTTAAGTAACTTTTTATAGCAATGATacaattgtatgtgtgtattctgagcttctatgTCCCCTGAGCTCCTTCCAGTGACCAACTTGCAGGTGGGCCCAGGCCAGGGCTGGAGAAAAAGCTCTGAGACTTGTGGGTTTCTACCTTCAAAATTTTGGACCAAAGTTTAGCTTTCTGCCCGCCTCTGACTGTGCCCAGTTGAGGGGCTGACCTCTAGGCCTTAATGTCCTCCTGCACAGCCACCTCTATCCTAGCCTGTTCCTGTGGGAGGGGTTCCCTGCACCCTGGTTCTGTGGAAGGCGTGGAAGAGTgtaaatatttatgattttataCCTGTGGGGCTGAGGCGGTGCAGCAGTTTTTTATGGTGACAGATGTATATTTTGGTAACGACTACAGGCTCAGTATTGTCCTGGGGCCAGCCCTGGCCACATCTACCCCATCCCAGATGGTGTattggggaagggggggggggctttccaTTAAAGCAGTTTTATAACCTCTGTCTTCCCTGAGCCCTTCATTCTGAgctgtaggccaggctgggccTGGATTCAATAAACACCTGTGTCTTACA