Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Phf5a
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name PHD finger protein 5A
Also known as Ac2-246
Coordinate chr7:123095286-123101851
Strand -
Gene summary Predicted to enable RNA binding activity and zinc ion binding activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be located in nuclear matrix and nuclear speck. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and U2-type precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Phf5a

Retroname Coord Strand Genomic Region ENSG
Phf5aP1 chr9:4372683-4373760 - Intragenic
N/A UCSC
Phf5aP2 chr9:99713803-99714651 + Intragenic
N/A UCSC
Phf5aP3 chr13:78139683-78140181 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_138888.1
ATGGCTAAACATCATCCAGATTTGATTTTCTGCCGCAAGCAGGCTGGTGTAGCTATCGGAAGACTGTGTGAAAAATGTGATGGCAAATGTGTGATCTGCGATTCCTACGTGCGTCCCTGTACCCTGGTTCGCATATGTGATGAGTGTAACTATGGATCCTACCAGGGCCGCTGCGTGATCTGTGGAGGTCCCGGAGTCTCTGATGCCTACTATTGTAAAGAGTGCACCATTCAGGAGAAGGATAGAGATGGTTGCCCAAAGATTGTCAATTTGGGGAGCTCTAAGACAGACCTGTTCTATGAGCGCAAAAAATACGGTTTCAAGAAGAGGTGATGGCTGGGTGGCTCCTTCCTCCCCCATCGAACTGCTGCAGCTTCCAGGAAAGACGCCTACTACCACCAGCAGAAAGGGAACGGAGTTCAGAGTGTCACCAGAGCAGCCTGCTAGTGCTAGCGCCCTGGCCCCTGCCACCCCTTCTTTCCCTTCCCCGTGTTGCTGAGATGGAAGCGAGTTCCCACACAGCAAGCACCCTTGCAGACTGGAGGAGATGTCACTCACTTAGTCTGTAGTTTCCTTTTGTTTTTAGTTGAAAAGCAAGGCTCTGCTCTCCACATCGATCCTTTCCACTACAAAAGCTTCAGAGCACGTCAGTATACCGCCTTGACAAAACTGTCATTCAGAAGTGTGCTCTTGCAGCAGCTATGATGGGGTTGTCCTGGACCCTCAGGGTGGCCAGGTGCCATCAGAACAGTAATGTGATGTGACATTTCCCAGGTGGTGCTGGGTTCATTGTTAATTTCCTTCTTATAAATTGGAAGTTTCTGTTATTCTAATAAAGTTGTCTGTATTTTCTGGAA