Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Sub1
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name SUB1 regulator of transcription
Also known as Rpo2tc1
Coordinate chr2:62019902-62034704
Strand -
Gene summary Predicted to enable DNA binding activity; identical protein binding activity; and transcription coactivator activity. Predicted to be involved in negative regulation of DNA metabolic process and positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within SMAD protein signal transduction. Located in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sub1

Retroname Coord Strand Genomic Region ENSG
Sub1P2 chr1:220588131-220588400 - Intragenic
 N/A UCSC
Sub1P1 chr1:14993720-14994385 + Intergenic
 N/A UCSC
Sub1P3 chr1:32243529-32244202 - Intergenic
 N/A UCSC
Sub1P4 chr1:80892266-80892866 - Intragenic
 N/A UCSC
Sub1P5 chr2:149741277-149741925 + Intragenic
 N/A UCSC
Sub1P6 chr2:208356552-208357237 - Intragenic
Intragenic
 N/A UCSC
Sub1P7 chr2:43277937-43278544 + Intragenic
 N/A UCSC
Sub1P8 chr3:4231506-4232181 - Intergenic
 N/A UCSC
Sub1P9 chr9:17187095-17187714 - Intragenic
 N/A UCSC
Sub1P10 chr10:31129333-31129880 - Intergenic
 N/A UCSC
Sub1P11 chr15:12911987-12912669 - Intergenic
 N/A UCSC
Sub1P12 chr16:74650645-74651325 + Intragenic
Intragenic
 N/A UCSC
Sub1P13 chrX:135628391-135630029 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001009618.1
CGGCTGGAGCGGAGCGTGAGTGCGCGGGACCCTAGGCCAATTCCTCGAGGCTGCAGCCAGGCCGACCTCAGGCTACCGTCGCCCCTTCGCTCTCCTTGCCGGGAGAAATAGAAGCTCTTAAGAATGCCTAAATCAAAGGAACTTGTTTCTTCGAGCTCTTCAGGCAGTGATTCTGACAGCGAAGTTGAAAAAAAGTTAAAGAGGAAAAAGCAAGTTGTTCCAGAGAAACCTGTGAAGAAGCAAAAGCCTGGTGAGAGTTCTAGAGCACTGGCATCCTCCAAGCAGAGTAGCAGCAGCAGAGATGATAACATGTTCCAGATTGGAAAGATGAGATATGTCAGTGTTCGGGACTTTAAAGGAAAAATTCTAATTGATATTAGAGAATATTGGATGGACTCAGAAGGTGAAATGAAACCAGGGAGAAAAGGTATTTCTTTAAACATGGAACAATGGAGCCAGCTGAAGGAACAGATCTCTGACATAGATGACGCAGTAAGAAAGCTGTAAAGTCTGAGCCATATCAAGCCTGTACTGTCGTAGCTGTTTTACTCTGTCTTTTCACATTGGCTTTTGTTTTCTAAATGTTGTTTTCCACGCTGTTGTATATTTGGATTGCAGAACAATTTGTAAGACAAATACTTTTTTTTAATGTGCATTATTAAAATGTTCTAAGTGAAGCTAATTGTCAACTTTATTAAAGAGGATTGCTTTGTGCCCCTTACCTAGTGTAAAATAAAGTCAGATCATTACAATCTTAA
>XM_006232043.3
GCCAGAGCCTCTAAGTTGCCGTCACTTCCGGCTCTCTGTCAGTCCGGAGCAAGCGAGCGAGCTAGAGGCTGTTGGACGGCTGGAGCGGAGCAATGCCTAAATCAAAGGAACTTGTTTCTTCGAGCTCTTCAGGCAGTGATTCTGACAGCGAAGTTGAAAAAAAGTTAAAGAGGAAAAAGCAAGTTGTTCCAGAGAAACCTGTGAAGAAGCAAAAGCCTGGTGAGAGTTCTAGAGCACTGGCATCCTCCAAGCAGAGTAGCAGCAGCAGAGATGATAACATGTTCCAGATTGGAAAGATGAGATATGTCAGTGTTCGGGACTTTAAAGGAAAAATTCTAATTGATATTAGAGAATATTGGATGGACTCAGAAGGTGAAATGAAACCAGGGAGAAAAGGTATTTCTTTAAACATGGAACAATGGAGCCAGCTGAAGGAACAGATCTCTGACATAGATGACGCAGTAAGAAAGCTGTAAAGTCTGAGCCATATCAAGCCTGTACTGTCGTAGCTGTTTTACTCTGTCTTTTCACATTGGCTTTTGTTTTCTAAATGTTGTTTTCCACGCTGTTGTATATTTGGATTGCAGAACAATTTGTAAGACAAATACTTTTTTTTAATGTGCATTATTAAAATGTTCTAAGTGAAGCTAATTGTCAACTTTATTAAAGAGGATTGCTTTGTGCCCCTTACCTAGTGTAAAATAAAGTCAGATCATTACAATCTTAACTGTGGTAGCCTTTTTTGATAAAAAAAAATAAACTAGTTACTGTTTAAGGCCCAAAAAACAACCTTTGTAGGCACGTTGTTGAGTCAGCTTACATTCAGAAGGATGTATTACATTGAGCTCTTAGATTGCTTTGTGAAATGTATACTCAGTCTCTTTCCAACCTGATTTGCTGAATTTTCCTCTCCAGGACTTCTCCCTACCACAATCCTTTTTTTCTTCAGTTTTCTTAGTATTCACTTTTCCATCACTCTCTACTCAGATATATTATGCTGATTTGGAAAGTCAAGCTGTCCATGTTGTTGCCTCCAAAGTCTACTGTGTTAATTATTAGCAGATTATCTGTTTAGTAACATGGCTTAAATGGGAACTCCAAGCAAGTGTGTGTCATTATTCATAGTGCGCTGTGGAGATGTTACTTAGTCTACAGAACATAGTGACTGATGTCTGATGAACCGTCTCTCGGTAAACCTTTGTGCTGGGATGGTGGTTATAAAATCAGATATTAAACTAGATTAGACTTGTAAAAATCGTGACACTTACTGGCCTCCTATTCTAACAAAGAGTGTGGATTATATGTAGTCAGACATGTCACTGAGCTTTACTGTCATGGTAGGTTACATGGCTAGTTTTTATAGAGTCGGCTGTTTTACAGTCTGGACAAGAGACTTCCAGATTTGATGTTTAAATTTGATAGACATTTTCATGAGTTTTCATTTTAACCAGGATGATTAAACAGACAGGCACATGTGTTAGGGCTATTGCTCCAGTGAAAAGGAAGGGCATAGTGTTCTGAGGGAAAGTGTTTGCAAAGGAAAAATCACACTGAAGGGAGTTAGCCTGTGATGTGAAAGGAACTTTCTTGAAACTAAATGCACATGGTATGTTGGCGATAACAGTAAGATGGGTCTAGGTAGAATAATAACTAACAAGGATGGTTTATACATGTGAAAAATGCTACCACTAAGGGCTGCCATATCAGAATTGCCCTATCTTATTAATCAGTTTAATTCCCATCGTCTTAAGCATTTTATGGAATTGTCAAGGATTTAATTTAAAAAATAATCTGTCAGGCCTCATGTGGTTAACTTATCCTCCTTACAGACATTCTTTAGGTAACTTTTTAGTGCGTTACTCCAAATTGACATATTAAAAAAAAGAGAGAACCTAAGTGTTTAAGATATATATACCATAGCTCATTCCTGAGGGATGCTACCCTTATAATTTGTTGTATTTCATTGATTAATTATTTACCATTTAAAGAAAGGATAGTTAGAACATAAAACTTTGGTTTTGGTATCGATGAGGAGGGAATAATAGACAAATTTTCTAGGCTGTGAATTCAGAGGGCGTATGTGCATTTCAGCTGTCTGCTTCATGGAGACCCGCAGAGACCTGTCATCTGTTACCTAGGCTGCTTAGCATAGTAAAACCTCCACTTGGAAAGCTTTTTCTGGCATAATTTGTTAGACTGATAGCTAAATTCATTCACTAATGTTACACCAGAGTTACTAATCTTTTTCTTTGTGTGTGTTGAAAAGGAGAATTAGGTTAAAAGGGGCTTTTCAGACGAAAAGAAAGGCTAGAGTCCTTCTATTTTGCATTCAGATGCCTTTCTCCTTAGtgtcttagtttcttttctcttgctgtgatgaagtgccctgatgaaagcagcttaagggagaaggggtttattcttaatcgcagttccaggttacagtccattgttgcatggagtcaaaaacaactacaggactccagacatccggacacacggctccatggccaggaaaccgagagcagtggttgcatgctcagttccctctccttttcatttaacctgacttagcctgtgagctggtcctgtccgcagtaggcaagagttctccacacatGCCTAGAGGCCTATCTTCAGGTGGTTCTAGGTTTAGTTGAATGGATAACACTATCATAGTAAGTTTTCTCCCAGGAAGAAGGCTTGACATTTTGAGGTATAAGTATCTTATTTTGTAATGCTAAAATGATTAGATCTGCTCTCAGGTTTGCCCTTTAATACGCCCCATAGCAAGGCCTCCAAATGGGTTTTCCTCTTAGAGTAAAAGCCTTTAGCCAATTTCCACAATCACTGGAAAAGAAAAACTTGTATTTTCTTTTGTTTTGCGTCACAAATGCCTAAAATCTTGGGAAATACTACCTCATTAACCTAGTCAAGATGCTGGTGATAACCAGTCTATTCTGCGTAGTATCTTAGAATCAGCAACTTAGGGAAAACCAAGGAGGAAAATGTGTCCTGACCTGGCTACAAAGGGAGGAGGGGATTGAACGTTTATGTAAGTGTTCCGGACAGGAATGTTAGCACAGAGCTTGCCACAAAGCTTGAAAGTCTTAACTGTTGAGTTATATTTAGGTATCTTTTTTGGATTTCTCTGCAGTTCATATTTTATGGAAATTAATGTAGTGAAACACTAAAGATCTCTTTTTTTTCCTTAAGGCATTTTTTTTCCAGATAAACTATAATGTAAACATGCATATAGTGAAACGTGTGTAATTCTGTAATTGTGGAATGCCTGTATGCTTTGTTTGGTACATCTTCCATGGGGGTGTCAATGAACCTATTATTCCACTTGTGAATATTTTAAATGTTGAAATAAAAACAAGAAATAGA