Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Ptma
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name prothymosin alpha
Also known as Thym
Coordinate chr1:86454279-86458434
Strand +
Gene summary Enables histone binding activity. Acts upstream of or within histone exchange. Predicted to be located in cytosol and nucleoplasm. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; extraembryonic component; and genitourinary system. Used to study polycystic kidney disease and pulmonary emphysema. Orthologous to human PTMA (prothymosin alpha). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ptma

Retroname Coord Strand Genomic Region ENSG
PtmaP1 chr1:138616677-138617659 - Intergenic
ENSMUSG00000103152 UCSC
PtmaP14 chr13:62926416-62927616 + Intergenic
ENSMUSG00000095895 UCSC
PtmaP15 chr13:70569997-70570888 - Intergenic
ENSMUSG00000114054 UCSC
PtmaP7 chr4:115310753-115311476 - Intragenic
ENSMUSG00000080142 UCSC
PtmaP11 chr8:55876736-55877306 + Intergenic
N/A UCSC
PtmaP20 chrX:50928388-50929365 - Intergenic
ENSMUSG00000081439 UCSC
PtmaP21 chrX:63090467-63091687 - Intragenic
ENSMUSG00000083346 UCSC
PtmaP8 chr4:44123167-44124218 + Intergenic
ENSMUSG00000084274 UCSC
PtmaP13 chr13:20932633-20933706 + Intergenic
ENSMUSG00000113168 UCSC
PtmaP16 chr14:13669255-13670467 + Intergenic
ENSMUSG00000045799 UCSC
PtmaP17 chr16:3744110-3745210 + Intragenic
ENSMUSG00000083579 UCSC
PtmaP18 chr17:90874243-90875267 - Intragenic
ENSMUSG00000093716 UCSC
PtmaP19 chr18:6370607-6371811 - Intergenic
ENSMUSG00000095614 UCSC
PtmaP2 chr2:134572040-134573167 - Intergenic
ENSMUSG00000081243 UCSC
PtmaP6 chr3:8945749-8947758 - Intragenic
Intragenic
ENSMUSG00000081594 UCSC
PtmaP4 chr3:51309502-51310704 - Intergenic
ENSMUSG00000104241 UCSC
PtmaP5 chr3:80306105-80306961 - Intergenic
ENSMUSG00000087123 UCSC
PtmaP3 chr3:124179248-124180325 + Intergenic
ENSMUSG00000096544 UCSC
PtmaP10 chr7:23763243-23764277 + Intergenic
ENSMUSG00000095331 UCSC
PtmaP12 chr8:89872763-89873876 - Intergenic
ENSMUSG00000094790 UCSC
PtmaP22 chrX:93659225-93660123 + Intergenic
ENSMUSG00000080974 UCSC
PtmaP9 chr5:73090074-73090639 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001360830.1
CGCGCGCCAAGCCGAGGCACTGCCGCTTTAAGCTCACTTGCCCATTGTTCGGAATCGAGCCAATGAGAGGACGCCCGCTCCCTGCGCTCAGCCAATAGCGCCGGGACTAGGGTGGCTGAGCACCGCCCACTAATCTATATTAAAGCTTCTGGCGCCGCGTGAGTCCCCCACTGGCTGCTCCGAAAAGCCATCTTTGCATTGTTCCTGGGTCGTGCTCCGCGCTCGCTGCAGCCACCTTCGCCGCCCACCGCCTCCTCCAGCGCGGACTCCGGCAGCTCTCTCGCCAGAGTCCTCGAACTCGACTTTTAATTCCCTCACTCGCGGCATCGGACCACCGGCGTGCCCCACCATGTCAGACGCGGCAGTGGATACCAGCTCCGAGATCACCACCAAGGActtgaaggagaagaaggaagttgtggaggaggcagagaatgGAAGAGATGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAggtagatgaagaagaggaagaaggtggggaggaagaggaggaggaggaagaaggtgacGGTGAgaggaggatggagatgaagatgaggaagctgaggctccTACGGGCAAGCGGGTAGCTGAGGATGATGAGGATGACGATGTGGACACCAAGAAGCAGAAGACCGAGGAGGATGActagacagcaaaaggaaaaataacCTTACGCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTCGAGTAGAGAAGCAGGCCCCGCCCGCCCACAGCGGGCAATGCCACCCACAGATATGACATGCGCTCTCCACCACCCCTCCAAAACTACAACATGAATTGGCAACATGGGAGGAAAAAAGAACCAGAACTTCCCAGGCcctactttttttcttaaaaatactttaaaaggaaaatttgtttgtattttttatttacattttatatttttgtacataTTGTTAGGGGTCAGCCATTTTTAATGATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGACCATgttcattataatctcaaaggagaaaaaaaaaaccttgtaaaaaaaagcaaaaacaacaacaaaaaaacaatcttATTCCGAGCATTCCAGTAACTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAaagataaaaagattttttttttccttttctttctgtctatgaagttgctgtttatttttttttggcctgTTTGATGTATGTGTGAAACAATGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTCTAACAATGGTGTCTCAAA
>NM_001360831.1
CGCGCGCCAAGCCGAGGCACTGCCGCTTTAAGCTCACTTGCCCATTGTTCGGAATCGAGCCAATGAGAGGACGCCCGCTCCCTGCGCTCAGCCAATAGCGCCGGGACTAGGGTGGCTGAGCACCGCCCACTAATCTATATTAAAGCTTCTGGCGCCGCGTGAGTCCCCCACTGGCTGCTCCGAAAAGCCATCTTTGCATTGTTCCTGGGTCGTGCTCCGCGCTCGCTGCAGCCACCTTCGCCGCCCACCGCCTCCTCCAGCGCGGACTCCGGCAGCTCTCTCGCCAGAGTCCTCGAACTCGACTTTTAATTCCCTCACTCGCGGCATCGGACCACCGGCGTGCCCCACCATGTCAGACGCGGCAGTGGATACCAGCTCCGAGATCACCACCAAGGActtgaaggagaagaaggaagttgtggaggaggcagagaatgGAAGAGATGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAggtagatgaagaagaggaagaaggtggggaggaagaggaggaggaggaagaaggtgacGgtgaggaggaggatggagatgaagatgaggaagctgagGATGActagacagcaaaaggaaaaataacCTTACGCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTCGAGTAGAGAAGCAGGCCCCGCCCGCCCACAGCGGGCAATGCCACCCACAGATATGACATGCGCTCTCCACCACCCCTCCAAAACTACAACATGAATTGGCAACATGGGAGGAAAAAAGAACCAGAACTTCCCAGGCcctactttttttcttaaaaatactttaaaaggaaaatttgtttgtattttttatttacattttatatttttgtacataTTGTTAGGGGTCAGCCATTTTTAATGATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGACCATgttcattataatctcaaaggagaaaaaaaaaaccttgtaaaaaaaagcaaaaacaacaacaaaaaaacaatcttATTCCGAGCATTCCAGTAACTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAaagataaaaagattttttttttccttttctttctgtctatgaagttgctgtttatttttttttggcctgTTTGATGTATGTGTGAAACAATGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTCTAACAATGGTGTCTCAAA
>NM_008972.3
CGCGCGCCAAGCCGAGGCACTGCCGCTTTAAGCTCACTTGCCCATTGTTCGGAATCGAGCCAATGAGAGGACGCCCGCTCCCTGCGCTCAGCCAATAGCGCCGGGACTAGGGTGGCTGAGCACCGCCCACTAATCTATATTAAAGCTTCTGGCGCCGCGTGAGTCCCCCACTGGCTGCTCCGAAAAGCCATCTTTGCATTGTTCCTGGGTCGTGCTCCGCGCTCGCTGCAGCCACCTTCGCCGCCCACCGCCTCCTCCAGCGCGGACTCCGGCAGCTCTCTCGCCAGAGTCCTCGAACTCGACTTTTAATTCCCTCACTCGCGGCATCGGACCACCGGCGTGCCCCACCATGTCAGACGCGGCAGTGGATACCAGCTCCGAGATCACCACCAAGGActtgaaggagaagaaggaagttgtggaggaggcagagaatgGAAGAGATGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAggtagatgaagaagaggaagaaggtggggaggaagaggaggaggaggaagaaggtgacGgtgaggaggaggatggagatgaagatgaggaagctgaggctccTACGGGCAAGCGGGTAGCTGAGGATGATGAGGATGACGATGTGGACACCAAGAAGCAGAAGACCGAGGAGGATGActagacagcaaaaggaaaaataacCTTACGCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTCGAGTAGAGAAGCAGGCCCCGCCCGCCCACAGCGGGCAATGCCACCCACAGATATGACATGCGCTCTCCACCACCCCTCCAAAACTACAACATGAATTGGCAACATGGGAGGAAAAAAGAACCAGAACTTCCCAGGCcctactttttttcttaaaaatactttaaaaggaaaatttgtttgtattttttatttacattttatatttttgtacataTTGTTAGGGGTCAGCCATTTTTAATGATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGACCATgttcattataatctcaaaggagaaaaaaaaaaccttgtaaaaaaaagcaaaaacaacaacaaaaaaacaatcttATTCCGAGCATTCCAGTAACTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAaagataaaaagattttttttttccttttctttctgtctatgaagttgctgtttatttttttttggcctgTTTGATGTATGTGTGAAACAATGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTCTAACAATGGTGTCTCAAA