Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl30
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L30
Also known as -
Coordinate chr15:34440651-34443422
Strand -
Gene summary Predicted to enable selenocysteine insertion sequence binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cytoplasmic translation; and defense response to Gram-negative bacterium. Is active in postsynaptic density. Is expressed in brain. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl30

Retroname Coord Strand Genomic Region ENSG
Rpl30P1 chr1:86401335-86401740 + Intergenic
ENSMUSG00000101328 UCSC
Rpl30P13 chr11:49569486-49569965 - Intragenic
ENSMUSG00000083061 UCSC
Rpl30P15 chr12:99013419-99013886 + Intergenic
ENSMUSG00000062582 UCSC
Rpl30P16 chr13:55275598-55276067 - Intergenic
ENSMUSG00000114481 UCSC
Rpl30P17 chr13:93584924-93585393 + Intergenic
ENSMUSG00000113237 UCSC
Rpl30P22 chr16:10619198-10619630 + Intergenic
ENSMUSG00000071671 UCSC
Rpl30P23 chr16:15689624-15690074 + Intergenic
ENSMUSG00000116102 UCSC
Rpl30P24 chr17:27748966-27749436 + Intergenic
ENSMUSG00000082741 UCSC
Rpl30P25 chr17:41316920-41317155 - Intergenic
ENSMUSG00000117119 UCSC
Rpl30P28 chr19:58477702-58478087 + Intergenic
ENSMUSG00000118253 UCSC
Rpl30P4 chr2:90577909-90578366 - Intragenic
ENSMUSG00000080873 UCSC
Rpl30P2 chr2:174282685-174283142 - Intergenic
ENSMUSG00000082641 UCSC
Rpl30P8 chr6:9146748-9146944 + Intragenic
ENSMUSG00000107851 UCSC
Rpl30P6 chr6:38353671-38354124 + Intergenic
ENSMUSG00000057696 UCSC
Rpl30P7 chr6:67394650-67395091 - Intergenic
ENSMUSG00000107508 UCSC
Rpl30P9 chr8:22720867-22721336 - Intragenic
ENSMUSG00000090007 UCSC
Rpl30P31 chrX:12323137-12323539 - Intergenic
ENSMUSG00000081461 UCSC
Rpl30P32 chrX:19629118-19629587 - Intergenic
ENSMUSG00000081735 UCSC
Rpl30P33 chrX:70847225-70847686 + Intragenic
ENSMUSG00000083411 UCSC
Rpl30P29 chrX:104322192-104322659 - Intragenic
ENSMUSG00000085791 UCSC
Rpl30P30 chrX:113890621-113891084 - Intergenic
ENSMUSG00000082260 UCSC
Rpl30P5 chr3:87586910-87587375 - Intergenic
N/A UCSC
Rpl30P10 chr9:70431932-70432102 + Intergenic
N/A UCSC
Rpl30P11 chr10:69161032-69161499 + Intergenic
N/A UCSC
Rpl30P12 chr11:106991840-106992064 - Intragenic
N/A UCSC
Rpl30P19 chr14:51245679-51245852 - Intragenic
N/A UCSC
Rpl30P21 chr15:93205865-93206328 - Intragenic
N/A UCSC
Rpl30P14 chr12:87418624-87419145 + Intragenic
ENSMUSG00000113648 UCSC
Rpl30P20 chr14:70474734-70475002 - Intragenic
ENSMUSG00000115645 UCSC
Rpl30P26 chr19:38373748-38373975 - Intergenic
ENSMUSG00000117920 UCSC
Rpl30P3 chr2:85098257-85098655 - Intergenic
ENSMUSG00000081014 UCSC
Rpl30P18 chr13:94868683-94868871 + Intergenic
N/A UCSC
Rpl30P27 chr19:41511557-41511704 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001163485.1
CGGTCCCACAATCCTCTGTCGGCCTAGAAGAGCTTTGCATTGTGGGAGCTCCTTCCTTTCTCGCTCCCCGGCCATCTTGGCGGCTGGTGTTGGTTGGGGGTTGTCCCGCacctaaggcaggaagatggtgGCCGCAAAGAAGACGAAAAAGTCTCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAAGTGGGAAGTACGTGCTGGGCTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAGTTGGTTATCCTTGCCAACAACTGTCCAGCTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCTAAAACTGGGGTCCATCACTACAGTGGCAATAATATTGAACTGGGCACAGCGTGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGACCCaggtGATTCTGATATTATTAGAAGCATGCCAGAACAGACTGGTGAGAAGTAAACAAGAAAGTTTTCCTTTAATAAAACTTTGCCAGAGCTCCTTTTGAAAAA
>NM_009083.4
CTTCCTTTCTCGCTCCCCGGCCATCTTGGCGGCTGGTGTTGGTGAGTGAGCTCTGCGGGGTAAACGATTAGGCGGCTCGGGGAGCTCCGCTAGCTGGTGTTTGACGCTCTGGATTATAatcctctcttctgtcctctgtgtatGCTAGGTTGGGGGTTGTCCCGCacctaaggcaggaagatggtgGCCGCAAAGAAGACGAAAAAGTCTCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAAGTGGGAAGTACGTGCTGGGCTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAGTTGGTTATCCTTGCCAACAACTGTCCAGCTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCTAAAACTGGGGTCCATCACTACAGTGGCAATAATATTGAACTGGGCACAGCGTGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGACCCaggtGATTCTGATATTATTAGAAGCATGCCAGAACAGACTGGTGAGAAGTAAACAAGAAAGTTTTCCTTTAATAAAACTTTGCCAGAGCTCCTTTTGAAAAA