Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl6
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L6
Also known as Taxreb107
Coordinate chr5:121342564-121347304
Strand +
Gene summary Predicted to enable 5.8S rRNA binding activity; mRNA binding activity; and tRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal large subunit assembly. Located in postsynaptic density. Is expressed in several structures, including genitourinary system; intestine; liver; lung; and spleen. Orthologous to human RPL6 (ribosomal protein L6). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl6

Retroname Coord Strand Genomic Region ENSG
Rpl6P2 chr1:57557678-57558426 - Intergenic
ENSMUSG00000101826 UCSC
Rpl6P3 chr1:86836483-86837424 - Intragenic
ENSMUSG00000084106 UCSC
Rpl6P1 chr1:172609016-172609472 + Intergenic
ENSMUSG00000102430 UCSC
Rpl6P10 chr10:110961708-110962584 + Intergenic
ENSMUSG00000091086 UCSC
Rpl6P11 chr14:30124062-30124973 + Intragenic
ENSMUSG00000114397 UCSC
Rpl6P12 chr14:37633792-37634550 - Intergenic
ENSMUSG00000114227 UCSC
Rpl6P14 chr15:46802594-46803091 + Intergenic
ENSMUSG00000115495 UCSC
Rpl6P15 chr18:47547498-47548298 - Intergenic
ENSMUSG00000117515 UCSC
Rpl6P16 chr19:34033511-34033876 - Intergenic
ENSMUSG00000118302 UCSC
Rpl6P17 chr19:45438714-45439686 - Intragenic
ENSMUSG00000057605 UCSC
Rpl6P4 chr2:26924808-26925600 + Intergenic
ENSMUSG00000083335 UCSC
Rpl6P5 chr3:112238221-112239011 - Intergenic
ENSMUSG00000105073 UCSC
Rpl6P6 chr5:108301953-108302590 - Intragenic
ENSMUSG00000105188 UCSC
Rpl6P8 chr7:56454321-56454720 - Intragenic
ENSMUSG00000108647 UCSC
Rpl6P7 chr7:101222632-101223563 - Intergenic
ENSMUSG00000067121 UCSC
Rpl6P9 chr9:105998653-105998864 - Intergenic
ENSMUSG00000099717 UCSC
Rpl6P18 chrX:14821303-14822232 - Intergenic
ENSMUSG00000081763 UCSC
Rpl6P20 chrX:54891085-54892011 - Intragenic
ENSMUSG00000081706 UCSC
Rpl6P21 chrX:57675726-57676667 - Intragenic
ENSMUSG00000081373 UCSC
Rpl6P19 chrX:154287004-154287939 - Intragenic
ENSMUSG00000083362 UCSC
Rpl6P13 chr15:26784796-26784978 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_011290.5
ATTGCTTATAGACCGGAAGCCGCTGCCTTAGTTCTCTTTCCCGTCTTGCAAGATGGCGGGTGAAAAAGCGCCTGATACAAAGGAGAAGAAACCTGCGGCCAAGAAGGCTGGCAGTGATGCTGCTGCCTCCCGGCCCCGGGCCGCCAAAGTAGCCAAAAAGGTTCACCCTAAGGGTAAAAAGCCCAAGAAGGCGAAGCCCCATTGCAGCCGAAACCCTGTCCTGGTGAGAGGAATTGGCAGGTACTCCCGATCTGCTATGTACTCCAGGAAGGCCTTGTACAAAAGGAAATACTCGGCTGCCAAGACCAAGgttgagaagaagaagaaaaaagagaaggtcCTTGCTACTGTCACCAAAACAGTTGGTGGGGACAAGAACGGTGGCACCCGGGTGGTGAAGCTTCGAAAAATGCCTAGGTATTATCCCACCGAAGATGTTCCTCGGAAGCTGCTGAGCCACGGCAAGAAGCCCTTCAGCCAGCACGTGAGAAGGCTACGCTCCAGCATCACTCCCGGAACTGTCCTGATCATCCTCACTGGGCGCCACAGGGGCAAGAGAGTGgttttcctgaagcagctggACAGTGGCTTGCTGCTTGTGACTGGGCCTCTTGTCATCAACAGAGTTCCTCTGCGCAGAACACACCAGAAGTTTGTCATTGCCACCTCTACAAAAGTTGATATCAGCGATGTTAAAATCCCCAAACACCTGACTGACGCTTACTTCAAGAAGAAGCAGCTGCGCAAGCCCAGGCATCAGGAGGGCGAGATCTTCGACACAGAGAAGGAGAAATACGAGATTACAGAGCAGCGAAAGGCTGACCAGAAAGCTGTGGATTTGCAGATTTTGCCAAAGATTAAAGCTGTTCCTCAGCTCCAGGGCTACCTGCGCTCTCAGTTTTCCCTGACAAACGGGATGTATCCTCACAAACTGGTCTTCTAAATTGTTAACCTAATTAAACAGCTTCATAGGTTcttttggtgtcctttttgtgtgttgtgtgtgcacatgtttgttgggtgggtgttttgCTGGTGTCTTTTCCTCTGTGTCTTCCTCTGGCCCTTTCTGGAAAGACCTGCTTAATCTGAAGCATGTGAGCTAGGCTAGTCCACTGGGTCCTGCTCTCTGCCCATCCCCAGCTGGCTTTGGATTAGAGGCACATACACTGCCATGGCTGCCTTTTACTGTGGCTGTGGTTTTGccctttttttttaagcaaatagAAAATGCTGCTGACTATACTGGA