Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Sub1
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SUB1 homolog, transcriptional regulator
Also known as P15|P9|Pc4|Rpo2tc1
Coordinate chr15:11981422-11996124
Strand -
Gene summary Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within SMAD protein signal transduction. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including branchial arch; central nervous system; genitourinary system; limb; and sensory organ. Orthologous to human SUB1 (SUB1 regulator of transcription). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sub1

Retroname Coord Strand Genomic Region ENSG
Sub1P4 chr13:72620075-72620649 - Intergenic
ENSMUSG00000113858 UCSC
Sub1P1 chr3:132360918-132361564 - Intergenic
ENSMUSG00000106313 UCSC
Sub1P3 chr5:93343614-93344170 + Intragenic
ENSMUSG00000083700 UCSC
Sub1P5 chrX:49631154-49631667 - Intergenic
ENSMUSG00000083112 UCSC
Sub1P2 chr5:80441887-80442247 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011294.3
TCAGTCCGGAGTAGGCGAGCGAGCGAGGCAGAGGTTTTTGGTCGGCCGGAGCGGAGCAATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCAGGCAGTGATTCGGACAGCGAAGTTGAAAAAAAGTTAAAGAGGAAAAAGCAAGCGGTTCCAGAGAAGCCCGTGAAGAAGCAGAAGCCTGGTGAGACTTCTAGAGCACTGGCATCCTCCaagcagagcagcagcagcagagatgaCAACATGTTCCAGATTGGAAAGATGAGATATGTCAGTGTTCGGGACTTCAAAGGAAAAATTCTAATTGATATTAGAGAATATTGGATGGATTCAGAAGGTGAAATGAAACCAGGAAGAAAAGGTATTTCTTTAAACATGGAACAATGGAGCCAGCTGAAGGAACAGATCTCTGATATAGATGACGCAGTAAGAAAGCTGTAAAATCTGAGCCATATCAAACCTGTACTGTTGTagttgtctttttacattggcttttgttttctaaatgttgTTTTCCAAGCTGTTGTATATTTGGATTGCAGAACAATTTGTAagacaaatacttttttttaatgtgcattatTAAAATGTTCTAAGTGAAGCTAATTGTCAAGTTTATTAAAGAGGATTGCTTTGTGCCCCCTACCTAGTGTGTAAAATAAAGTCAGATCATTACAATCTTAACTGTGGTACCCTTTTTTGATCAAAAAAACCTAGTTACTGTTTAAGGCCAAAAGAACAACTAGGCACACTGTTGAGTCAGCTTACATTCAGAAGGATTTGTATTACATTGAGTTTCTTAGATTGCTTTGTGAAATGTATACTCAGCCTTTTTCTTTCCAACCAGATTTACTGCGTTTTCCTCTCCAGGACTTCTCCCTACCACAATAACTTATCTTTTCTTCAGTTCTCTTAGTGCTCAAGTTTAAATCACTCTTTACTCAGATAGATTACGCTTATTTAGAAAGTCAAACTGTCAGTTTTGTTGCCTCCTAAGTCTACTGTGCTAATTACTAGTATCTGTTTGGCAACATGACTTATATGAGAACTCCAAGCAAGTGTATGTCATTATTCATAGTGCTCTGTGTAGATGTTGCTTAGTTTACAGAACATAGTGACTTTGATGTCTGATGAGCTGTCACTCAGTAAACATTTGTGCTAGGGTGATGGTTATAAAGTCAGATATTAAACTAGATTAGACTTGTAAAAAGTGTGAAACTTACTGGCCTACTGTTATATTCTAATAATGTGTGGATTCTATGTAGTCAGATGTGGCACTGAGCTCAACTGTGGTAGGTTCTGTGGGCAGTTTTAGAGTTGACTGTTCTACAGTTAATCTGGACAAGTGACTTCCAGACTTGATGTTAACTAGGTTTGATAGACATTTCCATTGGTTTTCATTTCAATTGTGATGATTAAGCAAGCAGACAGGCACATGTTTTAGGGACATTGCTCCAATGAAAAGGGCATAGTGTTCTGAGGGAAAATGTTTGCAAAGGAAAGTCACCACACTGAAGGGAGCTAGCCTGTGATGAGAAAGGAACTTTCTTGAAACTAAATGTTGTGCACATGATATGTTGGTGATAACATTAAGATGGGTCTTCGTAGAATAATAGCTAACAAGGACAATTTATAGATGTGAAAAAATGCTGCCACTAAGGGCTGCCATATCAGAATTGCACTGTCATACTGAGTCCCACCGTCTAAGCATTTTATAGAACTGTTAaggattaaatttaaaaaacagtctGCCAGGCCTCATGTGGTTAACTGTCCTCCCCACAGATACTCTTTAGGTAACTTTTTAGTGTGTTACTCCAAATTGATACATATATATCAAAGGGTTTAAGATATATACCATAGCTCATTCTTGAGGGATGATCCTCTTATAATGTGTTGCATTTCATTGATTTTATAAAGTATTCCTTATTTGTCATGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGAATAACAGGTAAATTCCTGAGGCCATGTGTTATATGTACATTTCAGCTGTCCGATTGCAGAGATCTGCCGTCTGCTACCTAGGCATTGCTAGCTGCTTAGCATAAAATTCCATGTGGAAAGCTTTCTCGGGCATAATTTGTTAGGTTGATAGCTAAATACATTCACTAATGTTATACCAgagttgttgttatttttctttgtgtgttgaaaaggaaaattgagttaaaagaagaggaaggacttttcagatggaaaagaaaGGGTACAGTCCTTCTATTTTGCGTTCAGATGCCTTTCTCCTcagtgtcttagtttcttttctgttgctgtggtgaaGTGCCCTGACAGAAGCAGccaagggagaaagggtttatcctGACTCACAGTTCCATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGaactccagacatctggccacatGGCTCCATagccaggaagctgagagctgtgATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTgagcccaggagctggagttggcCACAGCAGGCAAGATGATTCTCCAGACATCATGCCTAGAGGCCTATCTTTTGGGTAGTTCTAGATTCTGTTGAACTAATAACCATCATAGTAAGTTTTCTCCCAGGAAGAAGGCTTGACATTTTAAGGCataatatcttattttgtaacaCTAAAATAATTAGATCTGCTGCCAGGTTTTGCCCTTTAATATGCTCCATAGTAAGGCTTCCaaatgggttttcctcttagggtAAAAAGCCTTTGGCCAATTTCCACaatcactgaaaaagaaaaactcagattttcttttgtttgcttcacAAATGCCTAAAATCTTGAGAAATACTACCTCCTTACCTAGTCAAGACGCTGTGATAACCAGTCTGTGCTGCGTAGTGTTGGAGTCAGCAGCGTGGGGAAAACCGTGGGGAAAGAGCATCCTGGTCTGGCTGCAAAGGGAGGAAGGGATTGAACAGTTATGTAAGCGTTCCTGACAGGAACGCTAGCACAGAGCTTGCCATAGAGCCTGTGAACGTCTTCAGAACCGTTGAGTTATATTTAGGTAtcttttctgaatttctttgtGGTTCACTTTTTATAGAAATTAATGTAGTGAAAcactaaagatttttttcttaagaaaggTATTTTTTTCCAGATAAACTATAATGTAAACATGCATCTAGTGAGAAGTATGTGACTCTGTAATTGTGGAATGACTGTATGCTTTGTTTAGTACATCTTCCGTGGAGGTGTCAATGAACCTATTATTCCACCtgtgaatattttaaatgttgaataaaaacaagaaac