Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps3a1
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S3A1
Also known as Rps3a
Coordinate chr3:86045247-86049975
Strand -
Gene summary Predicted to enable mRNA 5'-UTR binding activity and translation initiation factor binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in several processes, including positive regulation of fibroblast proliferation; positive regulation of translation; and translation. Predicted to act upstream of or within cell differentiation. Located in cytosol; nucleus; and synapse. Is expressed in tail. Orthologous to human RPS3A (ribosomal protein S3A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps3a1

Retroname Coord Strand Genomic Region ENSG
Rps3a1P1 chr1:119169643-119170044 - Intergenic
ENSMUSG00000100767 UCSC
Rps3a1P13 chr10:115434888-115435667 - Intergenic
ENSMUSG00000112099 UCSC
Rps3a1P14 chr13:108807113-108807977 + Intragenic
ENSMUSG00000059751 UCSC
Rps3a1P15 chr14:88360400-88361269 - Intergenic
ENSMUSG00000062611 UCSC
Rps3a1P4 chr2:34454984-34455854 + Intragenic
ENSMUSG00000081992 UCSC
Rps3a1P5 chr2:49217353-49218168 - Intergenic
ENSMUSG00000084177 UCSC
Rps3a1P3 chr2:110248466-110249985 - Intergenic
ENSMUSG00000083320 UCSC
Rps3a1P6 chr7:16452996-16453860 - Intergenic
ENSMUSG00000108366 UCSC
Rps3a1P9 chr8:11733409-11734245 - Intergenic
ENSMUSG00000109933 UCSC
Rps3a1P10 chr8:62646596-62647244 - Intergenic
ENSMUSG00000110252 UCSC
Rps3a1P11 chr9:57391902-57392628 + Intergenic
ENSMUSG00000111414 UCSC
Rps3a1P12 chr9:79481657-79481797 + Intragenic
ENSMUSG00000111207 UCSC
Rps3a1P2 chr1:32349959-32350290 - Intragenic
N/A UCSC
Rps3a1P7 chr7:92342840-92343580 - Intergenic
N/A UCSC
Rps3a1P8 chr8:117228442-117229311 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_016959.4
CGAAAGAGCAAGGGTCACGTAGACGGCGCTCCCCGCCCGGCTCGCGTTAAGTTCTCGCGCGAGTTGTACTTCCGCCCTTTTGGCTCTCCGGTCGGCACCATGGCGGTCGGCAAGAACAAGCGCCTGACGAAAGGTGGCAAGAAGGGAGCTAAGAAGAAAGTGGTCGATCCATTTTCTAAGAAAGACTGGTACGATGTGAAAGCTCCAGCCATGTTCAATATTAGGAACATCGGGAAGACACTAGTCACGAGGACTCAAGGAACCAAAATTGCCTCTGATGGCCTCAAGGGTCGTGTGTTTGAAGTGAGCCTTGCTGATCTACAGAATGATGAAGTTGCGTTTAGAAAATTCAAGCTAATCACTGAGGACGTTCAGGGCAAAAACTGTCTGACTAACTTCCATGGTATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAGAAGTGGCAGACCATGATCGAAGCTCACGTTGATGTCAAGACGACCGATGGGTATTTGCTCCGACTTTTCTGTGTTGGCTTCACTAAGAAACGCAACAACCAGATAAGAAAGACATCCTATGCGCAGCACCAGCAAGTCCGCCAGATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACTAATGACTTGAAGGAAGTAGTTAATAAACTGATTCCAGACAGCATTgggaaagacatagaaaaggCTTGCCAGTCCATTTATCCTCTCCATGACGTCTTTGTTAGAAAAGTAAAAATGCTGAAGAAACCCAAGTTTGAATtgGGCAAGCTCATGGAGCTGCATGGGGAAGGCGGCAGCTCTGGCAAAGCAGCTGGAGACGAGACGGGTGCTAAGGTTGAGCGAGCTGACGGATATGAACCGCCAGTCCAAGAATCAGTGTAAAATCCAGATTTTTAATAGTGACAAATAAAAAGTCCTATTTGTGATCgtt