Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Clpb
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ClpB caseinolytic peptidase B
Also known as Skd3
Coordinate chr7:101312807-101444667
Strand +
Gene summary Predicted to enable ATP hydrolysis activity. Predicted to be involved in RIG-I signaling pathway; antiviral innate immune response; and cellular response to heat. Located in mitochondrion. Is expressed in several structures, including central nervous system; inner cell mass; limb; paravertebral ganglion; and retina. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with cataracts, neurologic involvement and neutropenia. Orthologous to human CLPB (caseinolytic mitochondrial matrix peptidase chaperone subunit B). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Clpb

Retroname Coord Strand Genomic Region ENSG
ClpbP1 chr9:25362005-25363497 + Intergenic
 ENSMUSG00000111600 UCSC
ClpbP2 chr10:41253852-41256940 - Intragenic
 ENSMUSG00000111601 UCSC

Expression

Transcript Sequences

>NM_001363991.1
AGCCATGTTGATCGTGGCTAGCACAGGGGCCGGCACCAGCGGGTTTTAGAAGCAGGTGTCATGATGTTGTCCGCGGTGTTGAGGAGAACCACGCCAGCGCCTCGGCTCTTCCTAGGGTTAATCAAATCTCCATCTCTCCAAAGCCGGGGAGGTGCTTACGGCCGTGGCGTTGTCACCGGAGACCGCGGGGAGCCGCAGCGGTTGAGAGCTGCCGCTTGGGTGCGCCCTGGAGCATCTTCTACCTTCGTCCCCGGACGGGGGGCAGCCACCTGGGGGCGCCGTGGAGAACGCACCGAGATCCCATACCTGACTGCCGCCTCGTCGGAACGCGGTCCTAGCCCCGAAGAAACACTCCCGGGACAAGACAGCTGGAATGGGGTCCCCAACAAGACGGGTCTGGGCATGTGGGCCTTGGCCATGGCGCTGGTGGTTCAGTGCTACAGCAAGAATCCATCCAACAAGGATGCAGCTCTAATGGAAGCTGCCCGGGCCAATAACGTGCAGGAAGTCAGAAGGCTGTTATCAGAAGGTGCAGATGTCAATGCAAGACACAAACTTGGCTGGACAGCACTGATGGTGGCATCCATCAGCCACAATGAGAGTGTGGTGCAGGTCCTGCTTGCTGCTGGAGCTGACCCAAACCTTGGGGATGAGTTCAGCAGTGTCTACAAGACTGCCAATGAACAGGGAGTCCATTCTCTGGAAGTCCTAGTCACTCGAGAGGATGACTTCAACAACCGGCTAAATCACCGTGCTAGCTTCAAAGGCTGCACAGCCCTGCACTATGCTGTCCTGGCCGATGACTACAGCATCGTCAAGGAGCTGCTGGACAGAGgAGCCAACCCCCTTCAGAGGAATGAGATGGGACACACACCCCTGGATTATGCCCGGGAAGGGGAGGTTATGAAGCTTCTGAAAACTTCTGAGACCAAGTAcatggagaagcagaggaagcgGGAGGCAGAGGAGCGGCGCCGCTTCCCACTGGAGCAGCGACTGAAGGAGCACATCATTGGCCAGGAGAGTGCCATCGCCACCGTCGGTGCTGCGATCCGGAGGAAGGAGAACGGCTGGTACGATGAGGAGCACCCTCTAGTCTTCCTCTTCTTGGGATCGTCTGGAATAGGGAAAACCGAGCTGGCCAAGCAGACAGCAAAGTATATGCACAAAGATGCCAAAAAGGGCTTCATCCGGCTCGACATGTCTGAGTTCCAGGAGCGACATGAGGTAGCCAAGTTTATCGGTTCTCCACCAGGCTACATCGGCCATGAAGAGGGTGGCCAGCTGACCAAGAAACTGAAACAGTGCCCAAATGCAGTAGTCCTCTTTGATGAGGTGGACAAGGCCCATCCAGATGTGCTCACCATCATGCTGCAGCTGTTTGATGAGGGCCGCCTGACAGATGGCAAAGGGAAGACCATTGACTGCAAGGATGCCATCTTCATCATGACTTCCAATGTAGCCAGTGATGAGATCGCCCAGCATGCATTGCAGCTCAGACAGGAAGCTTTGGAGATGAGCCGAAATCGAATCGCTGAAAACCTTGGGGATGTCCAGATGAGTGACAAGATCACCATCTCCAAGAACTTTAAAGAGAATGTGATCCGACCCATCTTGAAAGCTCACTTCCGGAGAGACGAGTTTCTGGGACGGATCAATGAGATCGTCTACTTCCTCCCTTTCTGCCACTCAGAGCTCATCCAGCTGGTCAACAAGGAACTGAACTTCTGGgccaagagaGCCAAGCAGAGGCACAACATCACACTACTGTGGGACCGCGAGGTGGCAGATGTGTTGGTTGATGGCTACAACGTCCACTATGGTGCCCGCTCCATTAAGCATGAGGTAGAGCGGCGTGTGGTAAACCAACTGGCGGCAGCCTATGAGCAGGACCTGCTACCAGGGGGTTGCACCCTGCGTATCACTGTGGAGGATTCGGACAAGCACCTCCTCAAGAGCCCTGAGCTGCCCTCACCCCAGGCTGAGAAGCGTCCACCTACATTGCGACTGGAGATCATTGATAAGGACAGCAAGACCCGCAAACTGGACATCCAGGCACCACTCCACCCTGAGAAGcccaccacccaccggaagtagtgggaaagaaagactACGGGGGAAGTGGACgggtttagaaatggttctttggagcaactgcCATCTgcgttgtcaggaaatcagcagttcagttcacaggtcagcagcggtAGCAATGcccagcagagacagccaggcctcagcctcagcacaagtcagcaggagggacctggaggaacgccaggagaagttctctgctgtgcctctcagcGAAGTGGAGATCTGTGAAGATGGAAGAGACTAAGAAGTGTTTAGCTATGTAaccaagccaagctcagcctccatcacagTCCGTCGAGTCCTTTTTGtgctccctccaaacatcacatgtcctccagcGGTCTTGCCTTAGCAAGTGCATCTGTCTCAGCCGACATCACTGTGCCAATCAGCCCGCGTCCTCAGAAGCAGCAAGACACACCACCAGGTTTTTGGTGCGTTTTTGTCTATGGAGTCCCGACagatgcagctcaactatgccaTGTAAGGCTGATCAATACATGTGTGTcgttagtgaagaatccttcattacatgtcctttcacgtgttttctttagcagaacatcctttcatctgtctgcttcagcaaaatgtttcttcacaagtctgccttagcctttcacctgtgtccactccaggaaaacactccttctcATGTTTGCTCctgcaaaacaccatccaacacaactgactttccaaagaacccttaagtttccacttgagCCCAGCCTTGTATGGGCAGTgctatccctgggcaggtgggctTAGCTAGTGGTCAAAGTGGATTGGAGAGCCTGGACGCTGTTCCTCAGTGCCTTGGCTCAGTTCCTGATGGCTTCCCTCAGTGGACTTCTGTACGCAATAAGCCATAAACTCTCTACTcacccaagctgcttttggttagTGTTCTACACTAACACAGAAAAGTAACTACAACAATATAGAGTAAATTAAAAtacatctatgtgtgtatatgtgtgcatgatatGTGTAGATACACACACGTAGGCATCACTGCCCTCCCAAATACTAGAGGATGAGTTCTAAATGCTTTAGACCAATCCAAAAAGATCAATCTGGCTTAATGGTCCATTCTATACAAACCACTTGGGAGATGGCTACAGGGGGATTGGGAGTCcagagtcatcctcagctacgagttcaaggccagcctgaactatatgagtctttgtcttttaaaaaggtaGTTGGTGTGGTCCATGGTGGCTCGTtcttgtagtcccagcacttgggaggtggaggctgaaGAATCATCCCTGGGTAGTGACTGTGAGGCCAGCTgacctacatgagaccctgcggAAGGAAGGAATGAGCTCAGACTTGATAAGACTGATCAAAAGATCCTCCCAGTGTCACCTCTGACTATGTAGAAGTTCCAAGTAAGTAAACGGAACTGTAAGCACTGTTCTCATGAGGCTGTGCACCTGCAGTCAGCGTCAGCAATACCATCAAACCAGCGAGTGCTAGCTAGTCCTCTGGAAGGAGAATATCTGTTTCACCTTTACAATTACGATTATTGTTGAAGAGAATGCCctcatttttagaaaatataaagacAATTTGAGATGTTCCAGGAATCTTAGTTTGTGATGTACACAGGAGGAGAAGCTGCAATTACTGTTTGGAAATCTGCAGGAAAGTGTACAGAAATTCTTTATATTCTGTTTGCAACTTTAAGTTTAGAACAACTTTAAAATTAAGGTCTTTAAGTGAAAGATAAAACATGTATCAGTGTATGTTGTTTTGAGTGGGATTTGATAAAAACCCTAAGTTCAAGAAaacatatttgtatgtatatgatcgACCACCAAGAAACTAAAGTGTTTGACTTGTAAGTGCTGGCTGCCTCTCAAGGCTGAACAAGGCAGGACATCACTGTGAAAGCAGCTAGAGGAGAATACCAAATGGGAACAAATTGTGGAAAGTAAATTCTGATGTGCAATTGTGCATTTAGAAAACCCAAAGGCAGTTGTAAAAGCTTAACTTGGTGACTGACTAAATAAAAGCTcagtat
>NM_009191.4
AGCCATGTTGATCGTGGCTAGCACAGGGGCCGGCACCAGCGGGTTTTAGAAGCAGGTGTCATGATGTTGTCCGCGGTGTTGAGGAGAACCACGCCAGCGCCTCGGCTCTTCCTAGGGTTAATCAAATCTCCATCTCTCCAAAGCCGGGGAGGTGCTTACGGCCGTGGCGTTGTCACCGGAGACCGCGGGGAGCCGCAGCGGTTGAGAGCTGCCGCTTGGGTGCGCCCTGGAGCATCTTCTACCTTCGTCCCCGGACGGGGGGCAGCCACCTGGGGGCGCCGTGGAGAACGCACCGAGATCCCATACCTGACTGCCGCCTCGTCGGAACGCGGTCCTAGCCCCGAAGAAACACTCCCGGGACAAGACAGCTGGAATGGGGTCCCCAACAAGACGGGTCTGGGCATGTGGGCCTTGGCCATGGCGCTGGTGGTTCAGTGCTACAGCAAGAATCCATCCAACAAGGATGCAGCTCTAATGGAAGCTGCCCGGGCCAATAACGTGCAGGAAGTCAGAAGGCTGTTATCAGAAGGTGCAGATGTCAATGCAAGACACAAACTTGGCTGGACAGCACTGATGGTGGCATCCATCAGCCACAATGAGAGTGTGGTGCAGGTCCTGCTTGCTGCTGGAGCTGACCCAAACCTTGGGGATGAGTTCAGCAGTGTCTACAAGACTGCCAATGAACAGGGAGTCCATTCTCTGGAAGTCCTAGTCACTCGAGAGGATGACTTCAACAACCGGCTAAATCACCGTGCTAGCTTCAAAGGCTGCACAGCCCTGCACTATGCTGTCCTGGCCGATGACTACAGCATCGTCAAGGAGCTGCTGGACAGAGgAGCCAACCCCCTTCAGAGGAATGAGATGGGACACACACCCCTGGATTATGCCCGGGAAGGGGAGGTTATGAAGCTTCTGAAAACTTCTGAGACCAAGTAcatggagaagcagaggaagcgGGAGGCAGAGGAGCGGCGCCGCTTCCCACTGGAGCAGCGACTGAAGGAGCACATCATTGGCCAGGAGAGTGCCATCGCCACCGTCGGTGCTGCGATCCGGAGGAAGGAGAACGGCTGGTACGATGAGGAGCACCCTCTAGTCTTCCTCTTCTTGGGATCGTCTGGAATAGGGAAAACCGAGCTGGCCAAGCAGACAGCAAAGTATATGCACAAAGATGCCAAAAAGGGCTTCATCCGGCTCGACATGTCTGAGTTCCAGGAGCGACATGAGGTAGCCAAGTTTATCGGTTCTCCACCAGGCTACATCGGCCATGAAGAGGGTGGCCAGCTGACCAAGAAACTGAAACAGTGCCCAAATGCAGTAGTCCTCTTTGATGAGGTGGACAAGGCCCATCCAGATGTGCTCACCATCATGCTGCAGCTGTTTGATGAGGGCCGCCTGACAGATGGCAAAGGGAAGACCATTGACTGCAAGGATGCCATCTTCATCATGACTTCCAATGTAGCCAGTGATGAGATCGCCCAGCATGCATTGCAGCTCAGACAGGAAGCTTTGGAGATGAGCCGAAATCGAATCGCTGAAAACCTTGGGGATGTCCAGATGAGTGACAAGATCACCATCTCCAAGAACTTTAAAGAGAATGTGATCCGACCCATCTTGAAAGCTCACTTCCGGAGAGACGAGTTTCTGGGACGGATCAATGAGATCGTCTACTTCCTCCCTTTCTGCCACTCAGAGCTCATCCAGCTGGTCAACAAGGAACTGAACTTCTGGgccaagagaGCCAAGCAGAGGCACAACATCACACTACTGTGGGACCGCGAGGTGGCAGATGTGTTGGTTGATGGCTACAACGTCCACTATGGTGCCCGCTCCATTAAGCATGAGGTAGAGCGGCGTGTGGTAAACCAACTGGCGGCAGCCTATGAGCAGGACCTGCTACCAGGGGGTTGCACCCTGCGTATCACTGTGGAGGATTCGGACAAGCACCTCCTCAAGAGCCCTGAGCTGCCCTCACCCCAGGCTGAGAAGCGTCCACCTACATTGCGACTGGAGATCATTGATAAGGACAGCAAGACCCGCAAACTGGACATCCAGGCACCACTCCACCCTGAGAAGGTGTGCTACACCATCTAGCATCCACCTGTCTGTGCCCTGAACATCTAATAAAGGCCCCTTGCTGTGGCATGGCAACCAATCCACCTTGCCCTCATGCCTTTCCAAGGCCTAGCACCCTCTCCTGCCTTTCTTGGTTGTGAGGTTCATAGTCTGTTATGATCTCCAAGGCAAGGAACAGGAAGCCTGGTCTGCACTTCAGTGTGCACTCCACTCCATGTCCTCACTAGAGCATTGACGTGTGGCCAGAAGCTCAGAAACATGCAGCGGAGAACAAGTCTGGCTGAAGAAGATAGGACTCAGGCAGTGGTGCACCACCTCTGCTTGTGCTGATGCGGCTCATCCTCAGGATGGCCCCGTGGCAGTGGGGGGAAGCCAGGAGCCCCAAGCACAGGTAGCTCTGTAGTTTATTCTACAGCTACCTCTTTCCCATGCCCTACAACTGTCAGAGTCAAGGCTTGTGACTGAGCCAGTGTAGAGCACCCATAGGTCTGACTGGtccctcttcctgccttcctctggGGTGGGACCATGGTCCCAGGTGAACACCTCAGCTCTGAGATGGGGCTCATTCAGCAGGCTGGCAGTCTAGATAACAGAAGGTGCTGTGGGAGCAAGGCTGGAGTCAGGCTCCACACAGGTGGGCACGGGTCTGCCTTAGCCCTGTCTCTTAACTGCCGTCCCAGCCAGGTAGCAATTCCATGGGCCTAGCATACCCATAAAGGACAGCAGGACACAGCAGGGCCTGGCAAGTCACTCTGCATCATCTGCAGAAGCCATCACCACTACAGGACTGAGTAGAGCCCTCCTGTGTGTTAGCCAGCCTCTGTCAAGATGTTTAGACAGGGCTGAAGTCAGTGCCATGACTCATAGATTGTCATGACAAGATGCTCACAGCTCTGAGTGACACCACCTCACCCCTAAGAGGCTGCCTGCTCCTTACTACCTCAAAACTGTATCCTCTTTTTACTTTGAAATTCTCTAGGCTTACAGaaaattatgaagaaaaaaaaaagtaaacctcTTATACCTTTAACTCAGCCTCTCCTGTCACACAGCATAGACGCATGGGGAGTGACAGGACCAGGAAAGTAGCATTGCCACACACTCCTGCCCCATCTGCAGGCTGTGGCTTTCACCAGCCTGGACATCCCACAGTGCATTCTACTTTCCATCGCCTTCCCCTGTGTCGCCCAAGGCAGTTTCTGTGTCTTCCCTGCTCTTCGGTGATCGTGACACTTTTGAAGAGTCCAGGCCAGTTCTTTTGTAGAATATCCTTCAGCCGAGCTCTATCTAATGCTCTCACTGATGAGTCTGGGGGTCTGCGTTTTTGGCaaggtgaccacagagaccaaTGCCCTGCTGCCTCCCTCACAGCACGTGGCAGTAACCCCAAAGCTCGAATTGTCTGGAAAAAGGTCCCCTACTGTAAAATTGAAAGTTTCACGCTGGGGTGTAGTATTAGACCTTGGCTAGCATGCACAGAGGCCCGGGTTGATTCCCAGtgccacaaaaataaataagtgtataaatataattttttcctAGAACTAAAATCAAGCCAGACTACTTACTGGTTTGTGCCTGGactcccagcaattgggaggttgAGGTAGGAttgtcacaagtttgaggctactTTGTGCTGCatactaagttccaggccagcctaggctacatagtaaaacccaaTCTCCAAGAGTCAAGTGGATACATCTCTATAAAGTCGAGACTGGCCTGGTCTGCAGAGAGAGCTGCGGGCCAGCCAGGactgcagagtgagaccttgtcttaaaaaacagcAATCCTTTACCATGGCCCAGCAGGTTATGGCACTTTTTACccagcctgatgacttgagttaaTTCCTTGAACCCATATAAAAATGAAGGTAGAGAAcggacctcaaaaaaaaaaatggttctctGACCACACACGTGGTGACATGACTTCCTGccccacacagacatatacatgacAGTAATAATACTTTTAAAGTAATGATAATGTTCTGGGAAGATACTTAAAGCTGTGTAAATGCCACGTGCTTATATTTTTTAGAGTAAGTGTCCATCTCAGCTGAGACATTTTACTGTTGAATTTCCTGTTTTACTTGTGCAGATTTGTTGTTCCTTATCCATCTGTGTTTAAtaattggtgttctgttccaAAGAAACCTTTCACCTCATTCATTTACTCAGAATGTATGCCCATGTATTCTGTGGTTATGATGTAGTAGGAAGTGTGTTGCTCCGTGCAGCCACGTGGGGCCTATGTGAGCTCCTTCATGCTTTGGCGTTGCTTGCACCTCCATGTTCTGCCACTGTAGACTGTCCTGGGCCAACTCACAGCCTCCACACCACAGCTCCCATTTCTCCAAGGCCTTCCTGTTTCCTGTTATTGTGTGAACCAATGGCTTCTTGATGCTCTAAAgaa