RCPedia: Genes

Summary

Gene Name	Hltf	Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Mus musculus
Full Name	helicase-like transcription factor
Also known as	P113\|Smarca3\|Snf2l3
Coordinate	chr3:20111975-20172655
Strand	+
Gene summary	Enables ATP-dependent activity, acting on DNA. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Is expressed in several structures, including early conceptus; genitourinary system; intestine; pancreas; and sensory organ. Orthologous to human HLTF (helicase like transcription factor). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hltf

Retroname	Coord	Strand	Genomic Region	ENSG
HltfP1	chrX:121010622-121012200	+	Intragenic	ENSMUSG00000082840	UCSC

Expression

Transcript Sequences

>NM_001355097.1
GGTTTCTCAGACTGTTGCAGGAAGGAGTGGTGTGGACACGTCTCACCGGGCGGACGCGGCCTGGCGGTTCTGATTTGGATTCCGGCGCCTGGGCCACGACGCCTTGAGGAGCTTTATCAGGCTGTCTGGGAAGATCTGGGGAGCCCAGGGCATCCCGAAGTCACCCCGCCCCGCGCCATGTCCTATACGTTCACGAGgggTCCTGTTTGGAAGTATTCGCAGTCTGTCCAGTATGGATCACACGAAAATATTCCAAGACTTTCATACTCAACTTTCTTGCCACATTTTGAATTCCAAGACATTATTCCTCCAGATGACTTCCTAACGAGTGATGAAGAGCAAGATTTGGTTTTATTTGGAACTATGAGAGGACAAGTTGTTGGACTACGCTATTACACAGGAGTTgtaaataataatgaaatggtTGCTTTACAACGAGAGCCTAATAATCCCTATGATAAGAATGCTATTAAAGTAAATAATGTGAATGGAAATCAGGTTGGCCATATAAAGAGAGAGATTGCAGCTGCCGTGGCCTATATCATGGACAACAAATTGGCACAAGTGGAAGGTGTAGTTCCTTTTGGTGCAAGTAATACTTTTACCATGCCTCTTTATATGACTTTctggggaaaagaagaaaatagaaacgTGGTTTTAGAGCAGTTGAAGAAACATGGATTTAAGTTGGGTCCCACACCAAAGACTTTAGGGTCGAGTTTGGAGAACGCATGGGGCTCTGGAAGAGCTGGACCAAGCTATAGTAGGCCGGCTCATGTGGCAGTACAGATGACAACTGACCAGCTCAAAACGGAATTTGACAAATTATTTGAAGATTTAAAAGAAGATGATAGAACTGTTGAAATGGAACCAGCTGAGGCTATTGAAACACCGTTGCTTCCACACCAAAAACAAGCTCTAGCTTGGATGATCGCACGAGAGAACAGTAAAGAACTACCACCATTCTGGGAACAGCGCAATGACTTATATTATAATACAATAACAAATTTTTCTGTGAAGGAACGACCGGAAAATGTTCATGGAGGAATTTTAGCGGATGATATGGGTTTGggcaAAACTCTTACTGCTATTGCTGTCATTCTTACCAACTTTGATGATGGCAGGCCTCTTCTCAGTAAGAGAGGCAAGAAGAATCATCCAGGAAAGGAATACAAGGATGAGACCATTAAACGCAGAGGAAGTAATATGGACAAGAAGGAAGATGGACACTCAGAGTCATCCACGTGTGGTGAAGAACCCAGTATTTCAGGAACTCCGGAGAAGAGTAGCTGTACTCTGTCGCAGCTGTCTAGCGTCTGCCCTAAGAGAAGAAAAATTTCTGTACAGTACATTGAAAGTAGTGATTCAGAGGAAATCGAGACAAGCGAACTGCCCCAGAAAATGAAAGgcaAGCTGAAAAATGTACAGTTAAATACTAAAAGTAGAGTAAAAGGATCATCTAAGGTTAAGGAAGATTCAAAATTTGCACTTACTTTTTTTGCCTCTGCAACACAAAGGAAAATGTTGAAAAAAGGCATGTCTATGATGGAGTGCTCAGAGGCATGTGACACTGGAGAGAGGACAAGAGCAACACTGATCATCTGTCCACTCTCTGTGCTCAGCAACTGGATTGACCAGTTTGGACAACATGTAAAATCAGAAGTGCACttgaatttttatgtttattatggTCCTGATCGTATTAGAGATTCAGCCTGGCTTTCAAAACAGGATATTATTTTGACTACTTACAATATTTTAACTCATGATTATGGAACTAAAGATGATAGTCCATTGCATAGCATCAAGTGGTTAAGGGTGATCCTGGATGAAGGCCATGCCATTCGAAATCCAAACGCTCAGCAGACAAAAGCTGTACTTGAGTTAGAGGCAGAAAGAAGATGGGTATTGACAGgtactCCTATCCAGAATTCTTTAAAGGACTTGTGgtctcttctgtccttcttaaAACTTAAGCCATTTATTGATAGAGAGTGGTGGTATAGGATCATACAGCGTCCTGTCACTACAGGAGATGAGGGAGGACTTAGGCGTTTACAGTCCTTAATAAAAAATATCACGCTTAGAAGAACAAAGACAAGCAAAATTAAAGGGAAACCTGTTTTGGAGTTGCCAGAAAGGAAAGTATTTATTCAGCACATTACTCTgtcagaagaagagagaaagatttaTCAGTCTGTTAAAAATGAAGGCAAAGCTGCCATTGGAAGGTATTTTACTGAAGGGACTGTCCTTGCACACTATGCAGATGTCTTGGGTCTTCTGCTTAGATTGCGGCAGATTTGTTGCCATACCCATCTTCTTACAAACGGAATGTCTTCAAGTGGCCCCTCCAGAAGTGACACGCCTGAAGAGCTGAGAAAGATGTTAATAGAGAAGATGAAGATAATTCTGAGCTCTGGTTCAGATGAGGAATGTGCAATCTGCCTGGATTCCTTAACATTTCCTGTGATAACCCACTGTGCACACGTGTTCTGTAAACCTTGTATCTGTCAGGTCATTCACAGTGAGCAGCCACATGCAAAGTGTCCTTTGTGCAGAAATGAGATACATGGAGATAATCTATTAGAATGTCCTCCCGAAGAATTGGCATGTGACAGTGACAAAGAGTCCAGTATGGAATGGAAGTCCAGCTCAAAGATTAATGCTCTAATGCATGCTTTGATTGAATTACGGACAAAGGACCCCAACATAAAAAGTTTAGTTGTTTCTCAGTTTACCACATTCTTGTCTTTAATAGAAACACCTCTTAAaGCCTCAGGATTTGTGTTTACTCGTTTAGATGGTTCCATGGCTCAAAAGAAAAGAGTTGAATCAATTCAGCGTTTTCAAAACACAGAAGCAGGATCTCCTACGATAATGCTACTGTCCTTAAAAGCAGGTGGAGTTGGCTTGAATCTCTGCGCAGCTTCTCGAGTGTTCTTAATGGATCCCGCCTGGAATCCTGCTGCAGAAGATCAGTGCTTTGACCGGTGCCATCGACTTGGCCAGAAGCAAGAGGTGATCATCAcaaaaTTCATTGTGAAGGACTCTGTGGAAGAAAATATGTTGAAAATACAGAACACGAAGCGAGACCTTGCAGCTGGAGCCTTTGGCACTAAGAAAACAGACGCCAATGACATGAAACAAGCTAAAATCAACGAAATCAGAACTTTAATTGACTTGTAACTTGTGGGGTGTTTCTAAGAGACAAGATGACTAAGAAGAAGCTTTATGGCTTATGATATAAACTGAAGAACAACTGAGACTGTATTTATGCTCTGAGAGTCTTACCTGACtaagagagatgatagataccCTTCTAAATCCTCACAGAATCCTCCCCAGCCTGTTAGTCCTCCGAGGGGACAGGACTAGCCGGCAAGCATCTTCTCAGCTCCCTTGCTCGGGCAGCCAGGCGAGGCAGAGTAGCATTCAGGTCAGGTTTTCTGTAGCGGTGAAAGTGGAATAACTGGGAGTGGCCTGCTTGGGTGAGTAGCCCATAGGATTTGTAGGACTAGTATCACATACAAATCAAGTCTCATTATGTATGGCATTGGAGTTCTTTAGTTCCTATACACAGTGAAATTAAGTGTAAACTAGTTATGGcccaaataaacaagaaagaaactcAGTTTACTcattttaattacaaataaaCTGAGGTTCCAAAGTGAAGGCCATGTGCGTCTTGTCCAGAAAACTACAGAGCTATCTATGCTTTAAAACATGAGAACAATCAAATTTGGTGTTAATAAAAAAAGTGAATTCTAAGATATATGAACCCCTGGGATGAGGGATGCTGCGCTCTGCTGTTTTACTACTTAGAAATGTACTGAAAATATTATATTTCAAATTGTGTTTCCAACTGGAttcttctttaaattaaaaaaatcaataaaaatctaaaaatttacCTTCT