Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Snrpc
Plot displaying the genomic locations of a parental gene (in chr17) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name U1 small nuclear ribonucleoprotein C
Also known as Snrp1c|U1-C|U1C
Coordinate chr17:28059002-28070942
Strand +
Gene summary Predicted to enable several functions, including RNA binding activity; U1 snRNP binding activity; and protein homodimerization activity. Predicted to be involved in mRNA 5'-splice site recognition and spliceosomal snRNP assembly. Predicted to be located in Cajal body. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease; mixed connective tissue disease; and systemic lupus erythematosus. Orthologous to human SNRPC (small nuclear ribonucleoprotein polypeptide C). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Snrpc

Retroname Coord Strand Genomic Region ENSG
SnrpcP1 chr1:34576959-34577658 - Intragenic
Intragenic
ENSMUSG00000101803 UCSC
SnrpcP10 chr10:15546754-15547692 + Intergenic
ENSMUSG00000112335 UCSC
SnrpcP11 chr10:42206579-42207271 - Intragenic
ENSMUSG00000081873 UCSC
SnrpcP14 chr13:24107470-24108173 - Intergenic
ENSMUSG00000082558 UCSC
SnrpcP15 chr14:112718751-112719484 + Intergenic
ENSMUSG00000058953 UCSC
SnrpcP17 chr15:65800096-65800836 - Intragenic
ENSMUSG00000092454 UCSC
SnrpcP18 chr15:95673610-95674320 + Intergenic
ENSMUSG00000043329 UCSC
SnrpcP23 chr19:46193610-46194344 - Intragenic
Intragenic
ENSMUSG00000093525 UCSC
SnrpcP3 chr2:61800476-61801012 - Intergenic
ENSMUSG00000083018 UCSC
SnrpcP2 chr2:128794760-128795433 - Intergenic
ENSMUSG00000082339 UCSC
SnrpcP4 chr3:151664774-151665386 + Intergenic
ENSMUSG00000104770 UCSC
SnrpcP5 chr4:116731580-116732207 - Intragenic
ENSMUSG00000082063 UCSC
SnrpcP6 chr7:126323082-126323788 + Intragenic
ENSMUSG00000108357 UCSC
SnrpcP7 chr7:131275970-131276636 - Intergenic
ENSMUSG00000109066 UCSC
SnrpcP8 chr7:140364417-140365120 + Intragenic
ENSMUSG00000107816 UCSC
SnrpcP9 chr9:92494473-92495082 - Intergenic
ENSMUSG00000101357 UCSC
SnrpcP12 chr10:62996921-62997126 + Intragenic
N/A UCSC
SnrpcP13 chr13:15989296-15990014 - Intergenic
N/A UCSC
SnrpcP16 chr14:118418807-118419547 - Intergenic
N/A UCSC
SnrpcP19 chr16:38811899-38812631 + Intragenic
N/A UCSC
SnrpcP20 chr16:47504726-47504876 - Intergenic
N/A UCSC
SnrpcP21 chr17:57749890-57750553 - Intragenic
N/A UCSC
SnrpcP22 chr18:61927958-61928496 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011432.2
GCTCGCGTCGGCGCAGCCTGTGTGCGTCAGTTCCTGGCGGCGGGGATCGGGGTAGCCAACGGCTTGTGGAGCATCATGCCCAAGTTTTATTGTGACTACTGTGATACGTATCTTACCCACGATTCTCCATCTGTGAGGAAGACACACTGCAGTGGTCGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCCCAGAGCCTGATTGACAAGACAACGGCTGCATTTCAACAAGGGAAGATCCCTCCTGCTCCGTTCTCTGCTCCTCCGCCTGCAGGGGCCATGATCCCACCTCCCCCCAGTCTCCCGGGCCCTCCTCGGCCTGGCATGATGCCTGCCCCCCACATGGGAGGCCCTCCCATGATGCCAATGATGGGCCCCCCTCCGCCCGGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGACCACCCATGGGAGGCCACATGCCCATGATGCCCGGACCTCCCATGATGAGACCTCCTGCCCGCCCTATGATGGTGCCCACCCGGCCTGGCATGACCCGGCCAGACAGATAAGAGCAGAAGCGCTCTTGATGGTTTTGTATTTCTTGTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTCCTAACTGAATATTTTTGGAGGGAGAAATAATACAAAAAAGTGCAGTTTTCACTTATATTGTGAAATGTGAAAATAAAGTCATCAGCTCTTTTAGTTAAA