Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Snrpe
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name small nuclear ribonucleoprotein E
Also known as SME|sm-E|snRNP-E
Coordinate chr1:133531609-133538018
Strand -
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in hair cycle and spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including methylosome; small nuclear ribonucleoprotein complex; and spliceosomal complex. Is expressed in central nervous system; sensory organ; and tooth. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Snrpe

Retroname Coord Strand Genomic Region ENSG
SnrpeP6 chr12:110028701-110028937 + Intergenic
ENSMUSG00000113217 UCSC
SnrpeP7 chr13:110996933-110997268 - Intergenic
ENSMUSG00000114320 UCSC
SnrpeP8 chr16:75543087-75543367 - Intergenic
ENSMUSG00000080750 UCSC
SnrpeP2 chr2:131163864-131164286 - Intragenic
ENSMUSG00000082044 UCSC
SnrpeP3 chr6:126967505-126967975 + Intergenic
ENSMUSG00000107389 UCSC
SnrpeP1 chr1:13506714-13507026 + Intergenic
N/A UCSC
SnrpeP4 chr7:15943408-15943570 - Intragenic
N/A UCSC
SnrpeP5 chr10:86276763-86277037 - Intragenic
N/A UCSC
SnrpeP9 chr18:32189922-32190168 + Intergenic
N/A UCSC
SnrpeP10 chrX:105033504-105033724 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_009227.3
TTGCTTCCGGAAGTCGCTTTCCGAGGCGGCCTTCCTACTCGTGTGGTCTTTGTGACTTCCACCATGGCGTACCGcggccagggccaaaaggtgcaGAAGGTGATGGTGCAGCCCATCAACCTTATCTTCAGATACTTGCAAAATagaTCTCGAATTCAGGTGTGGCTGTATGAACAAGTGAATATGCGGATAGAAGGTTGTATTATTGGCTTTGATGAGTACATGAACCTCGTATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCAAGAAAACAACTGGgTCGGATCATGCTAAAAGGAGATAATATTACTCTGCTCCAAAGTGTTTCCAACTAGCAGTGAATGGTGAAGTCTGTAGGATGTTGAGAAGACCCCTTGAGCGTGTTTAAAGATGTCTGCTGCAACCTGCATTTACTCAACTTGTTTTACTTGCACATTATTATTAGGTGACAATAAATGCTGTAGGAagtttttgttaaaatttta