Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Sdc1
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name syndecan 1
Also known as CD138|Sstn|Synd|Synd1|syn-1
Coordinate chr12:8821396-8843716
Strand +
Gene summary Predicted to enable identical protein binding activity and protein C-terminus binding activity. Involved in myoblast development. Acts upstream of or within canonical Wnt signaling pathway. Located in external side of plasma membrane. Is expressed in several structures, including alimentary system; egg cylinder; sensory organ; skin; and urinary system. Orthologous to human SDC1 (syndecan 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sdc1

Retroname Coord Strand Genomic Region ENSG
Sdc1P1 chrX:69443937-69445928 + Intergenic
ENSMUSG00000081199 UCSC

Expression

Transcript Sequences

>NM_011519.2
AGCTCCGCGGGAGAGGTGCGGGCCAGAGGAGACAGAGCCTAACGCAGAGGAAGGGACCTGGCAGTCGGGAGCTGACTCCAGCCGGCGAAACCTACAGCCCTCGCTCGAGAGAGCAGCGAGCTGGGCAGGAGCCTGGGACAGCAAAGCGCAGAGCAATCAGCAGAGCCGGCCCGGAGCTCCGTGCAACCGGCAACTCGGATCCACGAAGCCCACCGAGCTCCCGCCGCCGGTCTGGGCAGCATGAGACGCGCGgcgctctggctctggctctgcgcgcTGGCGCTGCGCCTGCAGCCTGCCCTCCCGCAAATTGTGGCTGTAAATGTTCCTCCTGAAGATCAGGATGGCTCTGGGGATGACTCTGACAACTTCTCTGGCTCTGGCACAGGTGCTTTGCCAGATACTTTGTCACGGCAGACACCTTCCACTTGGAAGGACGTGTGGCTGTTGACAGCCACGCCCACAGCTCCAGAGCCCACCAGCAGCAACACCGAGACTGCTTTTACCTCTGTCCTGCCAGCCGGAGAGAAGCCCGAGGAGGGAGAGCCTGTGCTCCATGTAGAAGCAGAGCCTGGCTTCACTGCTCGGGACAAGGAAAAGGAGGTCACCACCAGGCCCAGGGAGACCGTGCAGCTCCCCATCACCCAACGGGCCTCAACAGTCAGAGTCACCACAGCCCAGGCAGCTGTCACATCTCATCCGCACGGGGGCATGCAACCTGGCCTCCATGAGACCTCGGCTCCCACAGCACCTGGTCAACCTGACCATCAGCCTCCACGTGTGGAGGGTGGCGGCACTTCTGTCATCAAAGAGGTTGTCGAGGATGGAACTGCCAATCAGCTTCCCGCAGGAGAGGGCTCTGGAGAACAAGACTTCACCTTTGAAACATCTGGGGAGAACACAGCTGTGGCTGCCGTAGAGCCCGGCCTGCGGAATCAGCCCCCGGTGGACGAAGGAGCCACAGGTGCTTCTCAGAGCCTTTTGGACAGGAAGGAAGTGCTGGGAGGTGTCATTGCCGGAGGCCTAGTGGGCCTCATCTTTGCTGTGTGCCTGGTGGCTTTCATGCTGTACCGGATGAAGAAGAAGGACGAAGGCAGCTACTCCTTGGAGGAGCCCAAACAAGCCAATGGCGGTGCCTACCAGAAACCCACCAAGCAGGAGGAGTTCTACGCCTGATGGGGAAATAGTTCTTTCTCCCCCCACAGCCCCTGCCACTCACTAGGCTCCCACTTGCCTCTTCTGTGAAAAACTTCAAGCCCTGGCCTCCCCACCACTGGGTCATGTCCTCTGCACCCAGGCCCTTCCAGCTGTTCCTGCCCGAGCGGTCCCAgggtgtgctgggaactgattcCCCTCCTTTGACTTCTGCCTAGAAGCTTGGGTGCAAAGGGTTTCTTGCATCTGATCTTTCTACCACAACCACACCTGTCGTCCACTCTTCTGACTTGGTTTCTCCAAATGGGAGGAGACCCAGCTCTGGACAGAAAGGGGACCCGACTGCTTTGGACCTAGATGGCCTATTGCGGCTGGAGGATCCTGAGGACAGGAGAGGGGCTTCGGCTGACCAGCCATAGCACTTACCCATAGAGACCGCTAGGGTTGGCCGTGCTGTGGTGGGGGATGGAGGCCTGAGCTCCTTGGAATCCACTTTTCATTGTGGGGAGGTCTACTTTAGACAACTTGGTTTTGCAcatattttctctaatttctctgTTCAGAGCCCCAGCAGACCTTATTACTGGGGTAAGGCAAGTCTGTTGACTGGTGTCCCTCACCTCGCTTCCCTAATCTACATTCAGGAGACCGAATCGGGGGTTaataagactttttttgttttttgtttttgtttttaacctagaAGAACCAAATCTGGACGCCAAAACGTAGGCTTAGTTTGTGTGTTGTCTCTGAGTTTGTCGCTCATGCGTACAACAGGGTATGGACTATCTGTATGGTGCCCCATTTTTGGCGGCCCGTAAGTAGGCTGGCTAGTCCAGGATACTGTGGAATAGCCACCTCTTGACCAGTCATGCCTGTGTGCATGGACTCAGGGCCACGGCCTTGGCCTGGGCCACCGTGACATTGGAAGAGCCTGTGTGAGAACTTACTCGAAGTTCACAGTCTAGGAGTGGAGGGGAGGAGACTGTAgagttttgggggaggggtggcaagGGTGCCCAAGCGTCTCCCACCTTTGGTACCATCTCTAGTCATCCTTCCTCCCGGAAGTTGACAAGACACATCTTGAGTATGGCTGGCACTGGTTCCTCCATCAAGAACCAAGTTCACCTTCAGCTCCTGTGGCCCCGCCCCCAGGCTGGAGTCAGAAATGTTTCCCAAAGAGTGAGTCTTTTGCTTTTGGCAAAACGCTACTTAATCCAATGGGTTCTGTACAGTAGATTTTGCAGATGTAATAAACTTTAATATAAAGGAGTCCTATGAACTctactgcttctgcttcttcttctctgGACTGGTGGTATAGATATAGCCACCCTTTGCCCAAACCCTGGTAGCTCGGGGAAGCTTGGCTTAAGGCTGCACGCCTCCAATCCCCCAAAGGGTAGGATCCTGGCTGGGTCCAGGGTTCCTctgatttatttggttttgttgtgttgtgttgtgtttttcttttggctAAACTTCTTTTGGAAGTTGGTAAGTTCAGCCAAGGTTTTACAGGCCCTGATGTCTGTTCTTCTAAATGGTTTAAGTAATTGGGACTCTAGCACATCTTGACCTAGGGTCACTAGAGCTAAGCTTGCTTTGCAGGGCAGACACCTGGGACAGCCTTCCTCCCTCATGTTTGCTGGGACACTGCTGAGCACCCCTTGCTTACTTAGCTCAGTGatgttccagctcctggctaGGCTGCTCAGCCACTCAGCTAGACAAAAGATCTGTGCCCTGTGTTTCATCCCAGAGCTTGTTGCCAGATCACATGGCTGGATgtgatgtggggtgggggtggggtcatatCTGAGACAGCCCTCAGCTGAGGGCTTGTGGGACAGTGTCCAAGCCTCAGGCTGGGCTCATTCATATAATTGCAATAAA