Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Tdgf1
Plot displaying the genomic locations of a parental gene (in chr9) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name teratocarcinoma-derived growth factor 1
Also known as CR1|cripto
Coordinate chr9:110768676-110775226
Strand -
Gene summary Enables several functions, including Wnt-protein binding activity; nodal binding activity; and type I activin receptor binding activity. Involved in several processes, including morphogenesis of a branching structure; nodal signaling pathway; and positive regulation of cell migration. Acts upstream of or within several processes, including circulatory system development; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of fibroblast proliferation. Located in several cellular components, including Golgi apparatus; cell surface; and perinuclear region of cytoplasm. Is extrinsic component of plasma membrane. Is expressed in several structures, including blastocyst; brain; embryo mesoderm; extraembryonic component; and heart. Human ortholog(s) of this gene implicated in colon cancer and congenital heart disease. Orthologous to several human genes including TDGF1 (teratocarcinoma-derived growth factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Tdgf1

Retroname Coord Strand Genomic Region ENSG
Tdgf1P2 chr16:3548123-3550556 + Intergenic
 ENSMUSG00000095834 UCSC
Tdgf1P3 chr17:12408914-12409332 + Intragenic
 ENSMUSG00000063911 UCSC
Tdgf1P1 chr2:40177255-40178842 + Intergenic
 ENSMUSG00000081577 UCSC

Expression

Transcript Sequences

>NM_011562.2
ACCTGAGGGTCCTACTCAACACCTTAAGTTTCTTTTAAGGGAGGTATATTCCTCCGAAGTCCTCAATCACAAACCGTTTATAGGAAGAAGAGGCCCCATCCCCTGCCGGTCTACACGGAGATCTTGGCTGCTAACTTCCCACAGACTCTCCAGGACGGGGGCCTCTCTCATTTggcatatctttctttttaatctactgttttcattttgtgaaaTTAGCCTTTGGGTGTTTCGAGAATGGCTTTATGAACTAAAGCCATCTGCTAATATTGTGTTTCTTGTCTTTTCCTCCAACGTTTTTACGAGCCGTCGAAGATGGGGTACTTCTCATCCAGTGTGGTTTTGCTTGTGGCCATTTCCAGTGCGTTTGAATTTGGACCCGTTGCTGGGAGAGACCTTGCCATCAGAGATAACAGCATTTGGGACCAGAAAGAACCTGCCGTACGCGATCGGTCTTTCCAGTTTGTGCCTTCCGTGGGGATACAGAACAGTAAGTCGCTTAATAAAACTTGCTGTCTGAATGGAGGGACTTGCATCCTGGGGTCCTTCTGTGCCTGCCCTCCTTCCTTCTATGGACGCAACTGTGAACATGATGTTCGCAAAGAGCACTGTGGGTCTATCCTCCATGGCACCTGGCTGCCCAAGAAGTGTTCCCTGTGCAGATGCTGGCACGGCCAGCTCCACTGTCTTCCTCAGACCTTTCTACCTGGCTGTGATGGTCACGTGATGGACCAGGACCTCAAAGCATCCGGGACTCCGTGTCAAACGCCGTCTGTGACGACCACTTTTATGCTAGCTGGCGCCTGCCTTTTTCTAGATATGAAAGTATAGGTGTCATGTGAATTCCATGCCAGTGCCATAGCAAAGATGTCATTCATCTTGATGCTCACAGTGAATCCCTAATGTTACCCCTCAAAACACTAACTAGGCCTTACCTCTGCACAGCCCCTCCTCTTTCTGGAAAACTATGGCGTGTGTGCCAAGCACTGTAACAGCGAGTTACATTCCTAGCCTAAAAGCTACTCTAAGAATGTGCTGTCTGCCATAGCCTGAGTTTCTTGATAGAAGTAACTCTCTTACTTTTCTTCCTAAGACTTTTAAACAGTTCTGAAGGTTATTATTAAATCCCAATGTGCAACTGGAAGTAAATTCAGAGTAGCTGAAAACAGCTAAATTATCTTTAAGCAGGGAGGTGGTGGTGTCTACCTTAAATCAGGCAAAGGCAGGTatatttcttgagttccaggacagacaggcctacacagaaaccctgtctcggggagaaaaaagagagagagagaagaaaaactattatcttaaaagaaaattaatggacCAGGCATTGTGGCagatggctttaatcccagccctcaggaggtagGGATAGGAGGatctcaagagttcaaggccagcctggtctatgtagcgaacccctgtctcaaaaaggaaaaagcatCCTACGAGGGAGTTGAGGAAGTAATGAGGGTCTGTGCAGAGGGAGCAGCAGATGGGGAAGTGACTAAGACTGGGGAAACAGAGTGGATTGTTTGATTGATGTTTACGGAGGTACTGGGAATTTAAAAGCTAAGTTCTTCAGCCAAGCACAGTGGTGCACACTATTAAtgtcagctctcaggaggctaCAACAGGACTACTAAAAGCTCATGTCCAACCTGGGCTATGTACAGAGTACCAGGCCAACAAAGACTGAATGGCAAGACCCTCACAGAAAACCCAAACACCCGAGTCTCTTTTCTGCAAAAGTACGAAGGCTTTCTCCAAGCTATATACAATTATTCAACTGTTGTGGAGGAAAGAAAGTGTTTATTATTGTAGTAGTAAACCAGATTATAAAAACCACGTATTGTCAAGTCAGTTTTTATAATAATTGTTCATGAATATGCACAGTAAAAATGGGAACTCTGAA