Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Btf3
Plot displaying the genomic locations of a parental gene (in chr13) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name basic transcription factor 3
Also known as 1700054E11Rik
Coordinate chr13:98446405-98453514
Strand -
Gene summary Acts upstream of or within in utero embryonic development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol and polysomal ribosome. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Orthologous to human BTF3 (basic transcription factor 3). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Btf3

Retroname Coord Strand Genomic Region ENSG
Btf3P7 chr1:97876381-97877227 - Intragenic
Intragenic
ENSMUSG00000089782 UCSC
Btf3P2 chr1:124542926-124543348 - Intragenic
ENSMUSG00000101006 UCSC
Btf3P4 chr1:152282563-152283408 - Intragenic
ENSMUSG00000080878 UCSC
Btf3P18 chr11:41481838-41483112 + Intergenic
ENSMUSG00000081847 UCSC
Btf3P17 chr11:114799663-114800282 + Intergenic
ENSMUSG00000083237 UCSC
Btf3P21 chr14:123935407-123936037 - Intragenic
ENSMUSG00000082793 UCSC
Btf3P8 chr2:36798991-36799866 + Intergenic
ENSMUSG00000081591 UCSC
Btf3P9 chr3:86170283-86170950 - Intragenic
ENSMUSG00000103759 UCSC
Btf3P13 chr6:99747488-99748228 + Intergenic
ENSMUSG00000108082 UCSC
Btf3P14 chr7:89756423-89757294 - Intergenic
ENSMUSG00000062235 UCSC
Btf3P15 chr9:52315493-52316691 + Intergenic
ENSMUSG00000111112 UCSC
Btf3P16 chr9:59673736-59674577 - Intragenic
Intragenic
ENSMUSG00000087239 UCSC
Btf3P25 chrX:50301131-50301837 - Intergenic
ENSMUSG00000082950 UCSC
Btf3P24 chrX:135240803-135241675 + Intragenic
ENSMUSG00000084216 UCSC
Btf3P6 chr1:64857626-64858268 - Intragenic
N/A UCSC
Btf3P12 chr5:118640896-118641493 + Intergenic
N/A UCSC
Btf3P22 chr14:56902931-56903532 - Intergenic
N/A UCSC
Btf3P5 chr1:55408914-55409524 - Intergenic
ENSMUSG00000101945 UCSC
Btf3P1 chr1:123215308-123215751 + Intergenic
ENSMUSG00000101495 UCSC
Btf3P11 chr4:33053579-33054283 - Intergenic
ENSMUSG00000082851 UCSC
Btf3P19 chr12:119840068-119840371 - Intergenic
ENSMUSG00000114137 UCSC
Btf3P3 chr1:131835482-131835825 + Intragenic
N/A UCSC
Btf3P10 chr3:97595931-97596732 - Intragenic
N/A UCSC
Btf3P20 chr12:56612100-56612686 - Intergenic
N/A UCSC
Btf3P23 chr15:7923518-7924006 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001170540.1
GTGGCGTCGCGTTACTTCCGGCCTCCCTCTAGCTGCCATCTTGCGTCCCCGCGTGTGTGCGCCTTCTCTCAGCTGGTCTGCCCGAGACCCCCTGAGCGTGAACCTTAGTTCCCCGCGCGGCGCCATTTCCACTCCGACAAGATGAAAGAAACAATCATGAACCAGGAGAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAaaGGAACTGCTCGTAGGAAGAAGAAGGTGGTTCACAGAACGGCCACAGCAGACGATAAGAAACTGCAGTTCTCCTTAAAGAAGTTAGGGGTGAACAACATCTCTGGTATTGAAGAGgtGAACATGTTTACAAACCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCATCCCtggcagcaaacaccttcacCATTACAGGCCACGCTGAGACAAAGCAGCTGACAGAAATGCTTCCCAGCATCCTCAACCAGCTTGGTGCAGACAGCCTGACTAGTTTAAGGAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCCCTTGCTACTggagaggatgatgatgatgaagttcCAGATCTGGTGGAGAATTTTGATGAGGCTTCTAAGAATGAGGCAAACTGAATTGAAGCAACTTCTGAAGAAGGTGATACTTGCAGAAATTACAGGAGCTGCTATTTTATATCAtgactgctttttaaaatttttttgtttattatggATCTGATAAAATCTAGATCTCTAATATTTTTAAGCCCAAGCCCCCGGACACTGCAGCTCTTTTCAGTTTTCGCTATACCTAATTCATTCTTTGCGGCAAATAAAGCTGAAGAAGCCTGGGAATAAAGTTTGGAAAGGGTTAATAAAATTCTTTGCCTAGTA
>NM_145455.3
CTTGCGTCCCCGCGTGTGTGCGCCTTCTCTCAGCTGGTCTGCCCGAGACCCCCTGAGCGTGAACCTTAGTTCCCCGCGCGGCGCCATTTCCACTCCGACAAGGTACAGAAAAAAGGCCGTGGACGCCGGCGTGGGAGGAGAccgggagttgggggtggggcgggCGTTTCCCGGCAGGAGCGAGGCAGGGAGGGGACGGACGGAGCTGAGGAAAGCGATGCGACGGACGGGCGCTCCCACCCAGGCGGACTCTCGGGGGCGAGGGCGAGCCAGGGGCGGCTGGCCCGGGGCCGAAGCGACGCCCTCTCTCCCTCTCGGCGGAAGCCGAGGACGGGAGTCTCAGATGAAAGAAACAATCATGAACCAGGAGAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAaaGGAACTGCTCGTAGGAAGAAGAAGGTGGTTCACAGAACGGCCACAGCAGACGATAAGAAACTGCAGTTCTCCTTAAAGAAGTTAGGGGTGAACAACATCTCTGGTATTGAAGAGgtGAACATGTTTACAAACCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCATCCCtggcagcaaacaccttcacCATTACAGGCCACGCTGAGACAAAGCAGCTGACAGAAATGCTTCCCAGCATCCTCAACCAGCTTGGTGCAGACAGCCTGACTAGTTTAAGGAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCCCTTGCTACTggagaggatgatgatgatgaagttcCAGATCTGGTGGAGAATTTTGATGAGGCTTCTAAGAATGAGGCAAACTGAATTGAAGCAACTTCTGAAGAAGGTGATACTTGCAGAAATTACAGGAGCTGCTATTTTATATCAtgactgctttttaaaatttttttgtttattatggATCTGATAAAATCTAGATCTCTAATATTTTTAAGCCCAAGCCCCCGGACACTGCAGCTCTTTTCAGTTTTCGCTATACCTAATTCATTCTTTGCGGCAAATAAAGCTGAAGAAGCCTGGGAATAAAGTTTGGAAAGGGTTAATAAAATTCTTTGCCTAGTA