Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Pphln1
Plot displaying the genomic locations of a parental gene (in chr15) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name periphilin 1
Also known as CR|HSPC206|HSPC232
Coordinate chr15:93296224-93389794
Strand +
Gene summary Predicted to be involved in negative regulation of gene expression, epigenetic; positive regulation of DNA methylation-dependent heterochromatin assembly; and protein localization to heterochromatin. Predicted to act upstream of or within keratinization. Predicted to be located in Golgi apparatus and cytosol. Predicted to be active in nucleoplasm. Is expressed in several structures, including brain; future spinal cord; ganglia; genital tubercle; and sensory organ. Orthologous to human PPHLN1 (periphilin 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pphln1

Retroname Coord Strand Genomic Region ENSG
Pphln1P1 chr17:66534242-66534928 - Intergenic
ENSMUSG00000117246 UCSC
Pphln1P2 chrX:168152528-168153092 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001358748.1
GGAAGTGCCTTTAGGGCGAGCGGACGTCTGGCTTCGCGGGTTTCACCGGCGGCTGAGGCGGCGGCGACAGAGGCGGCGGCGACAGAGGCGGAGGCTCAGCAGTGGGACGTAGtgGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGACCGACTTCCGAGAGAACGCGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACCATAGAGTAGTTAATGTTGTGCCAAAGAGACCACCTCTGCTAGACAAGAGACCACCTCTGCTAGACAAGAGACCACCTCTGCTAGCCAGACCTGATGAAGGAGGCTACAGTAGATATTACAGTCATGTTGATTGCCGAGTATGTGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGTGGAGATGAATCTGGCTACAGATGGCTAAGAGATGATCATTCCACAAGCCGGCAGCCTGACTACAGGGACATGAGAGACGGCTTCAGAAGAAAGAGTTTCTACTCTTCACATTATTCGAGAGATCGGTCTCCCCATAAAAGGGACGCTCCCTTCTTCAGAGAATCCCCTGTCGGCCGGAAGGACTCCCCACACAGCAGATCCGGCTCCAGTGTCAGCAGCAGAAGCTATTCTCCAGAGCGAAGCAGGACTCACTCCTTCCATCAGTCTCAGCATAGAAGTAAAGAGAGATCCATCCAGTCAGTGAAAACCTCGAGAGATGCGTCACCCTCAAGTTCCTCAGCAGTTGCTTCATCCAAGGCGTTAGACAAACCCAGCAGGCTAACTGAGAAGGAACTTGCTGAGGCTGAAAGCAAGTGGGCTAATGAAACACTAGAGAAGTCAGACGAAAGTAACTTGGCTGAAATGAATGAGTTTGAGGCGGGATCCACGGCACCCTTATTTATTGACCAGACAGAAGAACCCGAGTCAAACACAGTAGATGGTACAGAACTGTATGAAGACAGCCAGCTCAGCAACCGCTCTAAAGCCATTGCCTCGAAAACCAAAGAGATTGAGCAGgtttaCCGACAAGACTGCGAGACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAGATCCCTCATTAGAAAAGTCTGTCCAGTTTGCACTGAGGCAGAACTTACACGAGATAGGTGAGCGCTGCGTGGAAGAGCTCAAGCGTTTCATTACTGAGTATGACAACTCTGCTCAGGACTTTGGAGACCCCTTTTAGAAGAAGAAGTACCCAGGTCAAAAGGTTTTCTTAGATTGTTTTTTTCTCCTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGATAGCTAAGCACATTTCTAGTACTAAATAAACATCTACAATAGCTTAAAGTATCTTAATTAGAATGTTTCCCCTATGTGTAGAATATTCTACTCTATCTTCAtacatttcctccctccaaaaaTAATATTCAGTTACTttaatgttcaaaagaaaaaagcagCTCTGGAGAGCAGCTCCCTGTATTTAACCCATGTTTCATAGTCTTCCATGACGTCTATGGTCATCTTTTTGCATACCGTGTAAaggttgtcttttttattttgttttgtgttttttgtctttttgttcttttttttcgagacagggtttctctgtgtatccctggctgtcctggaacccactctgtagaccaggctggcctctaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgctgtaTTCAGATGTTGATTTCCAGCTGAATACTCTTTGGTATTGTTATTTGAATTGCTAAGCACCTTCATTGTAGTTTGTAAACTCTCCTCTCCACCACCTTCTGATTGGTAAACACTGAGGGCCTGTAGGTCAGGAAAGgaaaggcagggcagggcagggcatcaCAAAAGGAAGTCTGACTTTCAGGGACTGAAAGATAACGGGCCATGTGGCAAACATGGACCAAAATAAATGGATTAGTTAAGCCATAGGAGCTAGTTGGGAAGAAGCCTAAGATATAAGGCCTTGGcattcataaataataaaaagtctcTGTGTTATTGTTGGGAGTCAGGGGTCGAAACAGTCTAACAGTAGTGATCATTTGGTCTCAGGAGTTTAATTTGTAGTTAAGATCATTCCAGATTGCATACAATTAGTGGTACCGTTAGCATTTTGAGTTGGTGATGTCAAAATATGCTGTCTTAATGAGTTAGAACTTTGCTATCATTCAATATTTGCTTTGAGAATAATTCTTattcaatatacaaaaaaatgCACTTGAAAATCTGTAAGGATCTGTTAGAACAAAATCTTCTCCCAAGTCAGTAAACTTGGTTCATCTCTTCTATGAAGTGCTCTTAAGGCTTCTACCTGCTCTCTCTAGACAATATTATGGACTAACAGGAGAGGTAATCTGAGATGCAAGATGAATATTAAGTTGAGATGGTCTCAGAAACCCATCTCATgggtataataaaaaaattagaatatacAGAGCACTTAAGTTATGTTTTAGGCCCACATTATATCAAAAACGGGACCTGACATGGCACTCATGCTTGGGATTAAGCTATAGATTACTCTGTCCATCTCCGTGATCTCAGTTCTGTGGGCGTAGAGGGGCTCACTGCTCACAAGTGTCCTCAGAACACACTGAGGCCAGCACAGCTgccagcaggtcctgagtgagcCACTGAATCAGTGAAGAGACACTTAGGATCTCTTGCTCACTTCCTGGTCCCTGGTTCACTGAGGCAAAATACTAAATTTGTGACATTAggcaccttaaaaaaaatcactgcccAATCAAATTATCtacctttttttgggggggggcgagGGGGGTCAGGGTCTTACAGTATAGTCCTAGCTAGCCTGAAAATCTCTGTGTAGACTAggatagccttaaactcacagacatctccccacccctacctcttACATGCTGGCGTTAAGCCCACGGGCCACCCTGCTCAgcatccttttgtttgttttcattttcattttttttctgtccttaTTACTTTTtgattcgagacagggttttgctgtgtgtcctaggctggcttcaaacttaacTGCTCTGGCCTTTAGCTTTCGggattcctgcctcagctttcctgaGCCCCAATGCTTGCCGTGACCATTGAGTGGCCTCTATGATCCTGTCTGCGGATATCCCTAAACCACATACAGATTATACTTAAGTAGAAATAGAAGAATGGTTAATTTTAATGAGCCCTAAAATAGATGTGTGAAGATTTGTATTATGccattttgaaaatttaaaactaattgacgacatgttttttgttttgtttgttttcttaaattccCCAAGTGAGAACACTTGTACGTTTTGGCATTGagtctttccatcccttttctgcGCACACTCCCCTTCTGAGCGTGTGCTGCGCAATGCCGGTCACTTCAGTAATACCACAAGcgattttccttcttcccttccactAATTCTCAGCTCTTTAAATCAAGTTATTAACAAGCATACGTATAAAATTTGAGGAGCttccaaggcaaaaaaaaaaaatgttcacttggtagaaacattcatttaaaaagagaATCTTACTGATAAATTATTTAAGTGAAGGCCCAGCCAGTCATCCTCTTCCTTCCACTCACACTGGGCCTTCGAAGCTGTGTCCAGCTTGCCGTCCGCGCTGTTCTGCCAGGCTCCACAGTGTTAAATGTTTCcttcatctttgtttttttttaaatgccttttgACATCTAAAATTCATGTGTACTAGAGtatgttttataaaatgtttttgatTCTACGGAGACATGTTTGTAAGTTATCCATTGTTTTTCAATAGACCTGATTCATATGATAAGTTCTCATTGCCTCACCATAAGGCCTTGATGATCAATATGGGGAAAGCAGATACTGTAAATGCAAAATAAAGCATCCGATACTAAGTAATAAA
>NM_146062.3
GGAAGTGCCTTTAGGGCGAGCGGACGTCTGGCTTCGCGGGTTTCACCGGCGGCTGAGGCGGCGGCGACAGAGGCGGCGGCGACAGAGGCGGAGGCTCAGCAGTGGGACGTAGtgGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGACCGACTTCCGAGAGAACGCGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACCATAGAGTAGTTAATGTTGTGCCAAAGAGACCACCTCTGCTAGACAAGAGACCACCTCTGCTAGACAAGAGACCACCTCTGCTAGCCAGACCTGATGAAGGAGGCTACAGTAGATATTACAGTCATGTTGATTGCCGAGTATGTGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGTGGAGATGAATCTGGCTACAGATGGCTAAGAGATGATCATTCCACAAGCCGGCAGCCTGACTACAGGGACATGAGAGACGGCTTCAGAAGAAAGAGTTTCTACTCTTCACATTATTCGAGAGATCGGTCTCCCCATAAAAGGGACGCTCCCTTCTTCAGAGAATCCCCTGTCGGCCGGAAGGACTCCCCACACAGCAGATCCGGCTCCAGTGTCAGCAGCAGAAGCTATTCTCCAGAGCGAAGCAGGACTCACTCCTTCCATCAGTCTCAGCATAGAAAGTCCTCGCGTGTCGGTGCTTCCTACAAACGACAGAATGAAGCAATTCGTGGAAGAGGTAAAGAGAGATCCATCCAGTCAGTGAAAACCTCGAGAGATGCGTCACCCTCAAGTTCCTCAGCAGTTGCTTCATCCAAGGCGTTAGACAAACCCAGCAGGCTAACTGAGAAGGAACTTGCTGAGGCTGAAAGCAAGTGGGCTAATGAAACACTAGAGAAGTCAGACGAAAGTAACTTGGCTGAAATGAATGAGTTTGAGGCGGGATCCACGGCACCCTTATTTATTGACCAGACAGAAGAACCCGAGTCAAACACAGTAGATGGTACAGAACTGTATGAAGACAGCCAGCTCAGCAACCGCTCTAAAGCCATTGCCTCGAAAACCAAAGAGATTGAGCAGgtttaCCGACAAGACTGCGAGACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAGATCCCTCATTAGAAAAGTCTGTCCAGTTTGCACTGAGGCAGAACTTACACGAGATAGGTGAGCGCTGCGTGGAAGAGCTCAAGCGTTTCATTACTGAGTATGACAACTCTGCTCAGGACTTTGGAGACCCCTTTTAGAAGAAGAAGTACCCAGGTCAAAAGGTTTTCTTAGATTGTTTTTTTCTCCTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGATAGCTAAGCACATTTCTAGTACTAAATAAACATCTACAATAGCTTAAAGTATCTTAATTAGAATGTTTCCCCTATGTGTAGAATATTCTACTCTATCTTCAtacatttcctccctccaaaaaTAATATTCAGTTACTttaatgttcaaaagaaaaaagcagCTCTGGAGAGCAGCTCCCTGTATTTAACCCATGTTTCATAGTCTTCCATGACGTCTATGGTCATCTTTTTGCATACCGTGTAAaggttgtcttttttattttgttttgtgttttttgtctttttgttcttttttttcgagacagggtttctctgtgtatccctggctgtcctggaacccactctgtagaccaggctggcctctaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgctgtaTTCAGATGTTGATTTCCAGCTGAATACTCTTTGGTATTGTTATTTGAATTGCTAAGCACCTTCATTGTAGTTTGTAAACTCTCCTCTCCACCACCTTCTGATTGGTAAACACTGAGGGCCTGTAGGTCAGGAAAGgaaaggcagggcagggcagggcatcaCAAAAGGAAGTCTGACTTTCAGGGACTGAAAGATAACGGGCCATGTGGCAAACATGGACCAAAATAAATGGATTAGTTAAGCCATAGGAGCTAGTTGGGAAGAAGCCTAAGATATAAGGCCTTGGcattcataaataataaaaagtctcTGTGTTATTGTTGGGAGTCAGGGGTCGAAACAGTCTAACAGTAGTGATCATTTGGTCTCAGGAGTTTAATTTGTAGTTAAGATCATTCCAGATTGCATACAATTAGTGGTACCGTTAGCATTTTGAGTTGGTGATGTCAAAATATGCTGTCTTAATGAGTTAGAACTTTGCTATCATTCAATATTTGCTTTGAGAATAATTCTTattcaatatacaaaaaaatgCACTTGAAAATCTGTAAGGATCTGTTAGAACAAAATCTTCTCCCAAGTCAGTAAACTTGGTTCATCTCTTCTATGAAGTGCTCTTAAGGCTTCTACCTGCTCTCTCTAGACAATATTATGGACTAACAGGAGAGGTAATCTGAGATGCAAGATGAATATTAAGTTGAGATGGTCTCAGAAACCCATCTCATgggtataataaaaaaattagaatatacAGAGCACTTAAGTTATGTTTTAGGCCCACATTATATCAAAAACGGGACCTGACATGGCACTCATGCTTGGGATTAAGCTATAGATTACTCTGTCCATCTCCGTGATCTCAGTTCTGTGGGCGTAGAGGGGCTCACTGCTCACAAGTGTCCTCAGAACACACTGAGGCCAGCACAGCTgccagcaggtcctgagtgagcCACTGAATCAGTGAAGAGACACTTAGGATCTCTTGCTCACTTCCTGGTCCCTGGTTCACTGAGGCAAAATACTAAATTTGTGACATTAggcaccttaaaaaaaatcactgcccAATCAAATTATCtacctttttttgggggggggcgagGGGGGTCAGGGTCTTACAGTATAGTCCTAGCTAGCCTGAAAATCTCTGTGTAGACTAggatagccttaaactcacagacatctccccacccctacctcttACATGCTGGCGTTAAGCCCACGGGCCACCCTGCTCAgcatccttttgtttgttttcattttcattttttttctgtccttaTTACTTTTtgattcgagacagggttttgctgtgtgtcctaggctggcttcaaacttaacTGCTCTGGCCTTTAGCTTTCGggattcctgcctcagctttcctgaGCCCCAATGCTTGCCGTGACCATTGAGTGGCCTCTATGATCCTGTCTGCGGATATCCCTAAACCACATACAGATTATACTTAAGTAGAAATAGAAGAATGGTTAATTTTAATGAGCCCTAAAATAGATGTGTGAAGATTTGTATTATGccattttgaaaatttaaaactaattgacgacatgttttttgttttgtttgttttcttaaattccCCAAGTGAGAACACTTGTACGTTTTGGCATTGagtctttccatcccttttctgcGCACACTCCCCTTCTGAGCGTGTGCTGCGCAATGCCGGTCACTTCAGTAATACCACAAGcgattttccttcttcccttccactAATTCTCAGCTCTTTAAATCAAGTTATTAACAAGCATACGTATAAAATTTGAGGAGCttccaaggcaaaaaaaaaaaatgttcacttggtagaaacattcatttaaaaagagaATCTTACTGATAAATTATTTAAGTGAAGGCCCAGCCAGTCATCCTCTTCCTTCCACTCACACTGGGCCTTCGAAGCTGTGTCCAGCTTGCCGTCCGCGCTGTTCTGCCAGGCTCCACAGTGTTAAATGTTTCcttcatctttgtttttttttaaatgccttttgACATCTAAAATTCATGTGTACTAGAGtatgttttataaaatgtttttgatTCTACGGAGACATGTTTGTAAGTTATCCATTGTTTTTCAATAGACCTGATTCATATGATAAGTTCTCATTGCCTCACCATAAGGCCTTGATGATCAATATGGGGAAAGCAGATACTGTAAATGCAAAATAAAGCATCCGATACTAAGTAATAAA