RCPedia: Genes

Summary

Gene Name	Rbbp8	Plot displaying the genomic locations of a parental gene (in chr18) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Mus musculus
Full Name	retinoblastoma binding protein 8, endonuclease
Also known as	9930104E21Rik\|CtIP\|RBBP-8\|RIM\|SAE2
Coordinate	chr18:11766333-11876264
Strand	+
Gene summary	Predicted to enable several functions, including DNA binding activity; identical protein binding activity; and single-stranded DNA endodeoxyribonuclease activity. Acts upstream of or within G1/S transition of mitotic cell cycle and blastocyst hatching. Predicted to be located in nucleoplasm. Predicted to be part of transcription repressor complex. Predicted to be active in site of double-strand break. Human ortholog(s) of this gene implicated in Seckel syndrome 2. Orthologous to human RBBP8 (RB binding protein 8, endonuclease). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rbbp8

Retroname	Coord	Strand	Genomic Region	ENSG
Rbbp8P1	chr9:64708621-64708966	+	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>NM_001252495.1
CAGACGGTAGGAAACCTGCCTGGCGAGTTCAATGAAAGGCATATTAGGTTATCCATTGCACACGGTATATAGCTTAGATGCAGCTGAGCTCTGCCACATCGCAGCAGTGTCTAGCAAACTCTGGTGTGGTCCAGAGAAGTGGCAGACACTCATCTGACATCTAAGTTCATAGCGTCAAGTAAAGACAGTGGTGACCCTCTGACCAGGTACTGCTGACCAGGGACAGGCACTGTCTAAATAAATTGAAGGGTATTTCAACAATCCAAAGACAACGTCACACCTATGTAAGGACACAAGAAAGGTCAGGGAAACATCAGCAAATAGAAGGGTGAAGCCTGGTAAGCAAGATGAGCATTTCAGGAAGCGGCTGTGGAAGCCCTAATTCTGCGGATGCATCCAATGACTTCAAGGAACTCTGGACAAAACTAAAAGAGTATCATGATAAGGAAGTGCAAGGTTTACAAGTCAAAGTAACCAAACTGAAAAAGGAACGAATTTTAGATGCACAGAGACTAGAAGAATTCTTCACCAAAAATCAACAGCTGAGAGACCAGCAGAAAGTCCTTCAGGAAACCATTAAAATTTTAGAAGATAGGTTAAGAGCAGGATTGTGTGATCGCTGTGCAGTAACTGAAGAGCATATGCACAAAAAGCAGCAGGAGTTTGAAAATATCCGACAGCAGAACCTTAAGCTTATTACAGAGCTGATGAATGAAAAGAATACTcttcaagaagaaaacaaaaagctttCTGAACAACTGCAGCAGAAAATGGAAAATGGTCAACAGGATCAAGTAGCTGAGCTTGCATGTGAGGAAAACATTATTCCAGACTCACCAGTAacatccttttccttttctggcaTTAACCGGCTACGAAAGAAGGAGAATCTCCATGTCCGATACGTGGAACAAACACATACTAAGTTGGAGCGCTCTCTATGTACAAATGaattaagaaaaatatctaaggATTCAGCTCCTGCACCAGTTAACTCTGAGGAACATGAAATTCTCGTAGCTGACACTTGTGATCAAAATCACTCACCACTGTCAAaAATATGTGAAACAAGCAGTTACCCCACTGATAAGACATCTTTTAATTTAGACACTGTTGTTGCTGAGACACTTGGACTTAATGGTCAAGAAGAATCTGAACCCCAAGGTCCCATGAGCCCTCTGGGAAGTGAACTCTACCACTGTCTCAAAGAAGATCACAAAAAACACCCTTTTATGGAATCTGCAAGAAGTAAGGAAGATAGCTTAAGattttcagACTCTGCTTCAAAGACACCTCCTCAAGAATTTACTACTCGGGCGTCATCTCCGGTATTTGGAGCTACCTCTACTGTGAAAGCTCATTTGGGTTTGAATACAagtttctccccctctctcttagacattgggaaaaaaaaccttCTGAAGACAGCTCCCTTTAGCAACATTGCTGTTTCTAGATCAGAGAAAGTTAGATCCAAATCTGAGGATAATGCCCTTTTCACACAACATAGTCTTGGGTCAGAAGTGAAGGTCATTAGCCAGTCATTTTCTAGTAAACAGATACTTACAAATAAAACTGTAAGTGACTCTGTAGATGAACAGTGCAGTGCTGACCACATGAATACTACTGTTGCTGATAAATATTTGGTGCCTTTGAAATCCCTGGGAGGCAAAGCATCCAAAAGGAAGAGGACTGAGGAGGAAAGTGAGCATGCAGTAAAGTGCCCCCAGGCCTGTTTTGATAAGGAAAATGCCCTTCCTTTCCCAATGGAGAATCAGTTCTCCATGAATGGAGACCATGTGATGGATAAACCTCTGGACCTGTCAGATCGGTTTGCAGCTACTCAGCGGCAAGAGAAGAACCACGGAAACGAGACTTCTAAAAACAAACTTAAGCAAGCCACTATTTACGAGGCTTTGAAGCCCATTCCAAAGGGCTCCTCCTCAGGCCGTAAAGCCTTGAGTGGGGACTGCATGCCAGCCAAAGACTCTTGGGAGACATACTGCTTACAGCCGAGGAGCCTCCAGTCCTCTAGTAAATTCTCTCCAGACCAAAAAACACCATtacagataaaagaagaaaatcctgTCTTCAAAACACCTCCATGTTCACAGGAAAGTTTGGAGACAGAGAATCTCTTTGGTGATGTGAAGGGTACTGGTTCTCTTGTGCCAACAAAAGTAAAGAGCAGAGCAGTCCATGGAGGATGTGAGCTTGCATCAGTTCTTCAGTTAAACCCCTGTAGAGTTGCTAAAACAAAGGCTCTGCCAAGCAACCAAGATACGTCCTTTGAAAATATCCAGTGGAGTGTAGACCCAGGAGCAGACCTTTCTCAGTATAAAATGGATGTTACTGTAATAGATACAAAGGATAGCAGTCACTCACGATTAGGAGGAGAAACAGTGGACATGGACTGTACATTGGTCAGTGAAACCgtgcttttaaaaatgaagaaacaagagCAAAAAGAAAGAAGTCCAAATGGAGACATAAAAATGAATGATAGCCTAGAAGATATGTTTGATCGGACAACACATGAAGAGTATGAGTCCTGTTTGGCAGATAGCTTCTCCCAGGTACCAGATGAGGAAGAACTGCCTGAcaccacaaagaaaacaaacaTACCTGCTGATAAACAAGATGgagtcaaacagaaagcatttgtGGGGCCATATTTTAAAGATAAGGAGAGAGAAACTAGCATACAGAATTTTCCTCATATTGAGGTAGTtcggaaaaaagaagagagaaggaaattgCTTGGGCACACATGTAAAGAATGTGAAATTTATTATGCAGATTTGccagcagaagaaagagaaaagaagttgGCTTCCTGCTCAAGACACCGATTTCGCTACATTCCACCCAACACACCAGAGAATTTCTGGGAAGTTGGTTTTCCTTCTACTCAGACGTGTCTGGAAAGAGgttATATCAAGGAAGATCTCGATCTTAGTCCTCGTCCCAAAAGACGGCAGCCTTACAACGCGGTCTTTTCTCCAAAAGGCAAAGAACAGAGGACCTAGACACTGGCGTGAAAGCAGGAGAGCAGACCTTTCTGTGTTTCATTTAGTTATTTATAGTTAAAGTTGGAATAAACATTGATCTTTGATATTTTTTGATCCTCTATAAAATGATTTATAAATGAGTTTTCTATTAAAAGTGTTTTAAATGGCATATACCAACCATACAAATAACTAAAATGTGGATgtgttactttttttcttttgtacctTTAAGCAGTAGGGTGTTTCATTTTGCACTCTAAATTTAGGGTTATTTACTTTATTTGGTAATTATAGCTTTTGAAATACGGCTGTTGTAGTCTATAATTTATTCTGTATGGATCTTCATCATCTATTTCCTTTGGTGTTTATCTGCACAAGAGCCCTCGTGGTAATCTTTAGGGGTTTTCAGTTTATTCATTAACCTGTAGATCATACCAGCTTTTGACATGCAAGTATGTTTTTTTAAGGGGTGGAAGCTAACTTTTCAATATAGTCCTTCTGACTGTCCAgca