Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Ybx1
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name Y box protein 1
Also known as 1700102N10Rik|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a
Coordinate chr4:119134524-119153462
Strand -
Gene summary Enables chromatin binding activity; mRNA binding activity; and single-stranded DNA binding activity. Involved in epidermis development and negative regulation of cellular senescence. Acts upstream of or within several processes, including cellular response to interleukin-7; negative regulation of striated muscle cell differentiation; and negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Part of histone pre-mRNA 3'end processing complex. Is expressed in several structures, including branchial arch; central nervous system; facial prominence; gonad; and retina. Orthologous to human YBX1 (Y-box binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ybx1

Retroname Coord Strand Genomic Region ENSG
Ybx1P4 chr11:99822850-99824867 + Intergenic
ENSMUSG00000086688 UCSC
Ybx1P5 chr15:15324406-15325283 - Intergenic
ENSMUSG00000114972 UCSC
Ybx1P6 chr16:13885195-13886098 + Intragenic
ENSMUSG00000083536 UCSC
Ybx1P7 chr17:22138774-22140277 - Intergenic
ENSMUSG00000117049 UCSC
Ybx1P2 chr6:37662571-37664240 - Intergenic
ENSMUSG00000107035 UCSC
Ybx1P1 chr6:109102479-109103498 + Intergenic
ENSMUSG00000107501 UCSC
Ybx1P3 chr7:66733162-66733867 + Intragenic
ENSMUSG00000108833 UCSC
Ybx1P8 chrX:21031657-21032099 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_011732.2
CGCCATTCTCGCTAGTTCGATCGGTAGCGGGAGCGGAGAGCGGACCCCAGAGAGCCCTGAGAGCCCCACCGCCGCCGCCGGCCTAGTCACCATCACACCCGGGAGGAGCCGCAGCCGTCGCCGCCGGCCCCAGTCACCATCACCGCAACCATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCCCCCGCCGCCGCCCTCAGCGCCGCCGACACCAAGCCCGGCTCCACGGGCAGCGGCGCGGGTAGTGGCGGCCCGGGTGGCCTCACATCGGCGGCGCCCGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACAGTCAAATGGTTCAATGTAAGGAACGGATACGGTTTCATCAACAGGAATGACACCAAGGAAGACGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGCGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGCCCTGGTGGAGTTCCAGTTCAAGGCAGTAAATACGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAAAGCGCTCCTGAAGGCCAGGCCCAACAACGCCGGCCCTATCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGCGCGTCGACCACAGTATTCCAACCCCCCTGTGCAAGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAGCAAGGTAGACCAGTGAGACAGAATATGTATCGGGGTTACAGACCACGATTCCGAAGGGGCCCTCCTCGCCAAAGACAGCCTAGAGAGGATGGCAATGAAGAGGACAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTATCGCCGAAACTTCAATTACCGACGCAGACGCCCAGAGAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAAATGCCGGCTTACCATCTCTACCATCATCCGGTTTGGTCATCCaacaagaagaaatgaatatGAAATTCCAGCaataagaaatgaacaaagattggagctgaagACCTTAAGTGCTTGCTTTTTGCCCTCTGACCAGATAACATTAGAACTATCTGCATTATCTATGCAGCAtggggtttttattatttttacctaaAGATGTCTCTTTTTGGTAATGACAAAcgtgttttttaagaaaaaaaaaaaaaaggcctggttTTTCTCAATACACCTTTAACGGTTTTTAAATTGTTTCATATCTGGTCAAGTTGAGATTTTTAAgaacttcatttttaatttgtaataAAGTTTACAACTTGATTTTTTCAAAAAAGTCAACAAACTGCAAGCACCTGTTAATAAAGGTCTTAAATAATAATGTCTAGTTTTGTCATAATTGAGTACTCTCTCCCACTTTTAGAATAACAGGTAACACCAGCAGTAAGCAGTCTGTCAGGAGTGCTGTGAGGCATCAGCTGTAGCCACGTGAGTGGGGTAGAGAAGCTTTGTGGGGCCGGGCTAGTCTGGGGTGTTTCCCTCTAGAGAAGCTCCAGGGCGAGCGCACTGGCATCGCACTAAAGAACTGCTGCTGAGTGGGGACTAATGGCTGCTAGTTGTCCGCCAAGTCCATCAACTTTTTAGGCCAATTCTTTGTAGTAGAAACTAATAGGAATTGATGAAAGACTTCAGCAGCCCTAttaacataaacacacagagacatgttaGTGTTAGCTCATACCAGTCATGGTGACTGCTGTAAATACTCTGCTGTCAAGAGCATAGTGAAAGAATTCCTGGGTAAGATTCACAGGTGTGAGTTTACCGATAACAGACAGTGTTGGTTAAAACCTAATGTtgggggccgggtgtggtggcgcacgcctttaatcccagcactcgggaggtagaggcaggcggatttctaaattcgaggccagcctggtctacagagtgagttccaggacagccagagctacacagagaaaccctgtctcaaaaaataaataaataaataaataaataaataaaacct