Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Prpf38a
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Also known as 2410002M20Rik
Coordinate chr4:108422064-108436533
Strand -
Gene summary Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleoplasm. Predicted to be part of U2-type precatalytic spliceosome. Is expressed in lower jaw incisor; submandibular gland primordium; upper jaw incisor; and vibrissa. Orthologous to human PRPF38A (pre-mRNA processing factor 38A). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Prpf38a

Retroname Coord Strand Genomic Region ENSG
Prpf38aP2 chr10:106896556-106897866 - Intragenic
 ENSMUSG00000112863 UCSC
Prpf38aP3 chr14:105280851-105282148 + Intergenic
 ENSMUSG00000115195 UCSC
Prpf38aP1 chr3:17977869-17979073 + Intergenic
 ENSMUSG00000105262 UCSC

Expression

Transcript Sequences

>NM_172697.3
AATTTGCTTGGGCCCTCTCTGGTGCGGGGTGTGCGTATTCCGGCGAAAGAGTTCTACGCCACAGCTTCCGGTACGAAGCTGGTGGCTTTCCGCGGTCGCAAGGGATTCCTTAATGTTTCCCTAGCCTCCggtagtccttttttttttttcccttcttttaaataaatactgaATGTGACGTATTAAGCAAGCCGACGGAAATAGAATTGAAAGAGTTCTAAAATGGCGAACCGTACAGTGAAGGATGCCCACAGCATCCATGGCACCAACCCTCAGTATCTGGTGGAGAAGATCATCCGGACGCGAATCTATGAATCAAAGTACTGGAAAGAAGAGTGTTTTGGACTTACAGCTGAACTTGTAGTGGACAAAGCCATGGAGTTAAAGTTCGTTGGTGGTGTGTATGGTGGAAACATAAAGCCAACTCCTTTTTTGTGTTTAACCTTGAAAATGCTTCAGATTCAACCTGAGAAGGATATCATTGTTGAGTTCATAAAAAATGAAGATTTCAAGTATGTCCGGATGCTGGGGGCACTTTACATGCGGCTCACAGGAACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGAAATGGAGAGTTTGTGCTGATGCATGTAGATGAGTTCATTTATGAACTCCTGCACAGTGAGAGAGTCTGTGATATCATTTTGCCCCGGCTACAGAAACGGTAtgtgctggaagaagctgagcaaCTGGAGCCTCGAGTTAGTGCCCTAGAAGAGGACATGGATGATGTGGAGTctagtgaggaagaggaggaggaagatgagaagCTTGAAAGAGTGCCATCACCTGACCATCGAAGAAGAAGCTACAGAGATTTGGACAAGCCAAGGCGTTCACCTGCACTGCGCTACAGGAGGAGCCGGAGTCGTTCTCCCAGAAGGCGGAGTAGATCCCCTAAAAGAAGAAGTCCTTCTCCCCGAAGAGAAAGGCATAGGAGCAAGAGTCCACGACGCCATCGGAGCAGGTCTAGAGACAGACGACACAGGTCCCGCTCTAAATCCCCAGGTCACCACCGTAGTCACAGACATAGAAGCCACTCAAAGTCTCCTGAAAGGTCTAAGAAAAGCCACAAGAAGAGCCGGAGGGGAAATGAGTAATGGATGCATCTTGACTTTGGTCCAAATGACCTCCTGTGGCTATGAGAGCATCTGTTTAAGTGGAATGATCAAGATCTCCTCTTCAGGCAGCTATGAGTATTTTGGGTTTTTCAAAATCAACTTCTtcttttgttgggttttgtttttattttaatattacagAGGTGCTAAGTTTTGTATCTCTTTGGATTATAACCAACAGCTTTGAAGAGTGTTTTTGACCAAATCAAGGTCAAGTTTTGGCCTAACCCACTATGGTTATTCATACTTAGCAGGGTCAAGAAGACCTGGGAATTTGAGAGGTAAAAAGATGTGATCCTTTCATTTGTAATTAAACTTGCCACAGTTCTCATTTTCT