Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Ppfia1
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
Also known as C030014K08Rik|LIP.1|LIP1
Coordinate chr7:144030492-144107497
Strand -
Gene summary Acts upstream of or within negative regulation of stress fiber assembly. Predicted to be located in several cellular components, including axon; dendrite; and focal adhesion. Predicted to be part of protein-containing complex. Predicted to be active in presynaptic active zone. Is expressed in several structures, including blood vessel endothelium; central nervous system; genitourinary system; retina; and spleen. Orthologous to human PPFIA1 (PTPRF interacting protein alpha 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ppfia1

Retroname Coord Strand Genomic Region ENSG
Ppfia1P1 chr6:56923804-56925128 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001033319.2
GGACGTCGGGCACGTTGACGCCGGCGACGCGCCGGGCCCGGTTCTCTGCGCTCGCTAGTGTCCCGCGGCGGCGGGCCGGCCTTCGTGACGAGCGGGGCGGCGGGCCCGGGGGCCGGGCGAGGACGCAGCCGCGGGGCTGCGTGGGTCGGCCCGCAGCCGGCCGCCGCCCGAAGGCCGCTTCATAGCCCCGGAGCCGCGCCCGCCGGCCAAGATGATGTGCGAGGTGATGCCGACCATTAGTGAAGCAGAAGGCCCTCCAGGAGGAGGTGGGAGCCATGGGTCAGGCTCCCCTTCACAGCCAGATGCTGATTCGCATTTTGAGCAGCTCATGGTTTCCATGTTGGAAGAACGGGACCGCCTTCTGGACACACTAAGAGAGACACAAGAAACACTGGCATTAACCCAGGGGAAGTTGCATGAAGTTGGTCATGAAAGAGATTCTTTGCAGAGGCAGCTCAATACTGCACTTCCACAGGAGTTTGCTGCGCTCACGAAGGAACTCAATGTGTGCAGGGAGCAGCTtctagagagagaggaagaaatcgCCGAGCTGAAGGCAGAGAGGAACAACACTAGGCTGCTGTTGGAGCACCTAGAGTGCCTTGTCTCCAGGCATGAGCGCTCTCTCCGGATGACAGTGGTAAAGAGGCAGGCACAGTCACCTGCAGGCGTGTCCAGTGAGGTGGAAGTGCTGAAAGCCCTGAAGTCACTGTTTGAACACCACAAAGCCTTGGATGAGAAGGTACGAGAGCGACTACGAGTGGCTCTGGAGAGGTGCAGCTTGTTAGAAGAGGAGCTGGGTGCCACCCACAAAGAGCTAATGATTCTTAAAGAACAGAATAATCAGAAGAAAACACTAACAGATGGACTGCTTGACGGAAACCATGAACAGGAAAGTGCACCAAGCACCAACGGCAAGAGATCTTCTGATGGCTCCTTGAGTCATGAGGATCTTGCCAAAGTGCTGGAGCTGCAGGAAGTCATAGACAGGCAGGCGAGAGAGCAGAGCCAGATGAAGGAGCGCCTGGCCTCCCTGTCCAGTCATGCAGCAGAACTAGAAGAGGATCTGGACACAGCTAGAAAAGACCTCATCAAGTCTGAAGAGATGAATACGAAACTGCAGCGAGAAGTCCGTGAAGCAATGGCCCAGAAGgaggatatggaagagagaatcaccaCCCTTGAGAAACGCTACCTCGCCGCACAGCGTGAAGCCACGTCTGTGCATGACCTCAATGACAAACTTGAAAATGAAATTGCAAATAAAGACTCCATGCACCGACAGACAGAAGACAAGAACCGCCAGTTGCAAGAGCGTCTGGAGTTGGCCGAGCAGAAGCTGCAGCAGACCCTGCGCAAAGCTGAGACGCTGCCAGAGGTGGAGGCTGAGCTGGCCCAGAGGGTGGCTGCACTCTCCAAGGCTGAGGAGAGACATGGCAATATTGAAGAGAGGCTGCGGCAGATGGAGGCACAGCTGGAGGAGAAAAATCAGGAGCTGCAGCGGgcaaggcagagagaaaagatgAACGAGGAACATAATAAGCGCCTGTCTGACACTGTGGATAAGTTGCTCTCAGAATCCAATGAGAGGCTGCAGCTGCATCTGAAGGAGAGAATGGCGGCGCTGGAGGACAAGaattcTCTACTAAGGGAAGTTGAAAATGCAAAGAAGCAACTAGAAGAGACCCAGCATGATAAGGACCAACTTGTCGTGACTATTGAAGCCCTGAAGGCTGAGCTGGAGCAGATGAGACTGAGAGGTCCTTCACTCCATCATGGCCGACCCCATTTGGGCAGCGTCCCGGacttcaggttctctgtggcAGACGGACATGTGGATGCTTACAGCACCAGTGCAGTGTTGCGGCGCCCCCAGAAGGGCCGACTGGCAGCGCTGCGGGATGAGCCCTCCAAGGTGCAGACCCTCAATGAGCAGGACTGGGAACGGGCCCAACAAGCCAGCGTCTTGGCAAATGTGGCACAGGCATTTGAGAGTGATGTCGATGTGTCTGATGGTGAAGATGACCGAGATACACTGCTCAGCTCAGTTGATCTGCTGTCACCCAGTGGACAGGCTGATGCCCAGACACTGGCCATGATGCTTCAGGAACAGCTGGATGCTATCAACAAAGAGATCAgGCTGAtacaagaagagaaggagaatacAGAACAGCGGGCAGAGGAGATCGAGAGCAGAGTGGGCAGTGGAAGCTTGGACAATCTTGGTCGTTTTAGATCAATGAGCTCCATTCCCCCCTACCCTGCTTCCTCGCTTGCTGGCTCCTCTCCTCCAGGCAGTGGTCGGTCCACACCAAGAAGGGTCCCTCACAGTCCTGCCCGGGAGGTGGACAGGCTGGGTGTCATGACTCTGCCTAGTGACTTAAGGAAGCACCGGAGACAGTTGCCAGCTTCCAGAGAAGAGGTACGAGACGACAAGACGACGATAAAATGTGaaacctctcccccctcctccccgaGGCCCCTGCGCTTAGACAGGATGCACAAGGGCGCACCGCACACGGTCAGCCATGAGGACATCAGGGACCTGAGGAACTCCACAGGCTCCCAGGATGGTCCCGTGAGCAACCCTAGCAGCAGTAATAGTAGCCAGGACTCCCTCCACAAAGCCCCAAAGAAGAAGGGTATCAAATCCTCCATTGGCCGCTTgtttgggaagaaggaaaagggccGGCCTGGTCCACTGGGCAAGGAGTCACCAGGGCAAGTTggtgtttcagagacagaaaatTCATCTCAAGATGCCCTGGGACTCAGCAAACTGGGAGGACAAGCTGAGAAAAACCGTAAACTTCAGAAAAAGCACGAGCTGCTGGAGGAGGCCCGCAGGCAAGGCTTGCCTTTTGCACAGTGGGATGGGCCCACAGTGGTAGTGTGGTTAGAGCTCTGGGTTGGGATGCCTGCCTGGTATGTGGCTGCTTGCCGAGCAAATGTCAAGAGTGGTGCCATCATGTCAGCCCTGTCAGACACTGAGATCCAGCGGGAGATTGGCATCAGCAACCCCCTGCATAGGCTGAAGCTGCGGCTGGCCATCCAAGAGATAATGTCACTGACTAGCCCTTCTGCTCCACCCACATCCAGGACGACCACAGGAAATGTCTGGTTGACACATGAAGAGATGGAAACGCTTACAGCCACGCCACAAACGGAAGACGAGGAGGGAAGCTGGGCTCAGACTCTAGCATATGGGGACATGAACCACGAGTGGATCGGCAATGAGTGGCTGCCCAGCCTGGGCCTGCCGCAGTACCGCAGCTACTTTATGGAGTGCCTTGTAGATGCCCGGATGCTGGACCACTTGACCAAGAAAGACTTGCGAGGGCAGCTGAAGATGGTCGACAGCTTCCACAGAAACAGTTTCCAGTGTGGAATTATGTGCCTGAGAAGGCTAAATTATGACCGAAAagaactggaaagaaaaagagaagagagtcaGAATGAGACAAGAGATGTGCTTGTGTGGAGCAATGACCGGGTGATTCGCTGGATCCTGTCGATTGGCCTTAAAGAGTATGCCAACAACCTAATAGAGAGCGGTGTTCACGGTGCACTTCTGGCTTTGGACGAGACTTTCGATTTCAGTGCCCTGGCACTCTTGTTACAGATTCCAACACAGAATACGCAGGCTCGAGCTGTCTTGGAAAGAGAATTCAACAACCTTTTGATCACGGGGACTGATCGGAGGTTTGATGAGGATGATGACAAAAGCTTCAGGAGGGcgccttcctggaggaagaagTTCAGACCAAAGGACATTCGTGGCTTGGCCTCTGGCTCTGCAGAGACGTTGCCTGCCAACTTCCGGGTCACCTCCTCAATGTCATCTCCCTCTATGCAGCCAAAGAAGGTTCAGATGGACGGTAGTGTGTCCGGAGCACAGAGGTTGGACTCTGCCACAGTCAGGACTTACTCCTGCTAGAGCCTCCTGCTGTTTACCCACACTACTTCTACAGATGACGTCGCTGAGGCACGGACGGTGTAGAGCTCGTCTGGCAACTTTTGCTATGTggacccaagatattttattacaGAGTTTTTAAActagtgaagaaaaaaatcataaataccatagagaaaatattttagaattgaCTGTTTCTTATATTTATGTAAACTTATGCCTCCTCATTTATATAGTTACTTACTCTTTCATGTATATCCAGGCTATAAATATCCTTTTGAGTCAACTCATGTTCTTATACCTAATTTTAGTCTTTTAAAGGAATGTACTGTAATGCTTGTGTATAAATCTGAGCAAATATAGGGCTTTTGTAAATTATGCATTTACTGTAATTATtcctgtttaattttttaatgatgAACCCGACAGAGGAAAGGATTTTGCTACGTTTATAAAGTCATCATGATACAAGCCATGTGCATTCTCCTCTACCCAGCTCTGTAACAATCATTCTGAAAGAAGCAGACTTTATTTCCAGATGTTTTCTGTCATATTTTAATGACTGACCTTAACCATACTTTTTCTAGACAAAATCTCAGCTTCCATTAGACTTGAGACTGATGGTCAGGACTCTGTGAACAGCCCTTACCCCAACCACATCCCTAGCCCTGCTCTGGACATGGGTGGATTGTCTCCAGAGGCTGAGCAGGGCCCTGAGCTGGTAACAGCACTCTACAGGGGCAGGGTGGCCTCACCTGCAGACTGAGCAGCTGATGGAGCCTCGaagccatctccctccctccacactcaTCAAGGACCAATCATGGGGCAGGTGCTCATTTCCTGGCTGGGGCAGAGCAGGTGAAAGCAAGAGACTTCAGCGGAGCAGGCAGCCTGCAACTCCAATAAAGGCcttatttttcttgtataaacTGTCTTACATTTATTTGTAACTGTTGTAAGAGTGGACCTAGTTCTCCACTCAGCTGTCTTGCTAGCCTCCTGACTGACTTCAGTGAACTAAGAAGCCACAGggctcaggcacacatgtgcgtATTTATTGTGTAGCTGATGTGGGAGAGGCTTTTATAtttgctttctgcttttaattCATCTGGACAGTTGgttgttctgtttttctgttaATCGTTTGTGACCCTCCCGATTATATAACAGTCTGTGCAGTCAACTTCTGAACTGTTTTTATCACAGTGTTATTTATTGCTGTTTTTCAATAAAGTCCCCAGCATTTTCCACTGCCAGTT