Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Phgdh
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name 3-phosphoglycerate dehydrogenase
Also known as 3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA
Coordinate chr3:98220487-98247285
Strand -
Gene summary Predicted to enable phosphoglycerate dehydrogenase activity. Acts upstream of or within several processes, including G1 to G0 transition; cellular amino acid metabolic process; and nervous system development. Located in myelin sheath. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 1; PHGDH deficiency; and amino acid metabolic disorder. Orthologous to human PHGDH (phosphoglycerate dehydrogenase). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Phgdh

Retroname Coord Strand Genomic Region ENSG
PhgdhP1 chr1:34407535-34408207 + Intergenic
ENSMUSG00000101206 UCSC
PhgdhP14 chr10:31515060-31516457 + Intergenic
ENSMUSG00000098038 UCSC
PhgdhP15 chr12:49371521-49372125 + Intergenic
ENSMUSG00000112651 UCSC
PhgdhP16 chr13:48466065-48467860 + Intergenic
ENSMUSG00000114881 UCSC
PhgdhP17 chr14:95657129-95658926 + Intergenic
ENSMUSG00000115243 UCSC
PhgdhP18 chr15:19454712-19456517 - Intergenic
ENSMUSG00000115516 UCSC
PhgdhP19 chr17:53503389-53505717 + Intergenic
ENSMUSG00000117244 UCSC
PhgdhP20 chr18:37053357-37055202 + Intergenic
ENSMUSG00000063514 UCSC
PhgdhP21 chr19:44839559-44840540 + Intergenic
ENSMUSG00000117967 UCSC
PhgdhP2 chr2:22072626-22074230 + Intergenic
ENSMUSG00000081467 UCSC
PhgdhP3 chr2:87030149-87031961 - Intergenic
ENSMUSG00000081168 UCSC
PhgdhP5 chr3:65520915-65522739 + Intergenic
ENSMUSG00000082280 UCSC
PhgdhP8 chr7:4911941-4913299 + Intragenic
ENSMUSG00000108840 UCSC
PhgdhP7 chr7:41315812-41317634 - Intragenic
ENSMUSG00000091401 UCSC
PhgdhP6 chr7:136412545-136414375 + Intragenic
ENSMUSG00000110126 UCSC
PhgdhP10 chr8:13795741-13797572 - Intergenic
ENSMUSG00000109617 UCSC
PhgdhP11 chr8:28573230-28575039 - Intergenic
ENSMUSG00000110372 UCSC
PhgdhP12 chr8:59672953-59674328 + Intergenic
ENSMUSG00000110401 UCSC
PhgdhP13 chr8:76438089-76439917 - Intragenic
ENSMUSG00000101431 UCSC
PhgdhP22 chrX:37993934-37995593 - Intragenic
Intragenic
ENSMUSG00000081147 UCSC
PhgdhP23 chrX:40337355-40339138 + Intergenic
ENSMUSG00000081880 UCSC
PhgdhP4 chr3:112806915-112807222 - Intragenic
N/A UCSC
PhgdhP9 chr7:83361008-83361490 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_016966.3
GCGAGGAGGGGGAGGATAAAGGGGGAGCGGGAGATCGAGAACCCTGCCCAGTCACCGGAGCCAGCCCTGCTTGCAGTTTCCTGAACTAAGTGCTTCTGCCCACCCACAGCAACTGATTCTAAGGCCTGACTCTAGCAATGGCCTTCGCAAATCTGCGCAAAGTACTCATCAGTGACAGCCTGGACCCCTGCTGCCGGAAGATCCTGCAAGATGGAGGGCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCTGAACTCCAGGACTGTGAAGGCCTCATTGTCCGGTCTGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAAGCTCCAGGTGGTGGGCAGGGCTGGCACAGGTGTGGACAATGTGGATCTGGAGGCTGCCACGAGGAAGGGCATCCTAGTCATGAACACCCCCAACGGGAACAGCCTCAGTGCTGCGGAGCTCACCTGTGGGATGATCATGTGCCTGGCCAGGCAGATTCCCCAGGCAACAGCTTCGATGAAAGATGGCAAATGGGACCGGAAGAAGTTCATGGGGACAGAACTGAACGGGAAGACACTGGGAATTCTTGGCCTCGGCAGAATTGGAAGAGAGGTGGCCACCCGAATGCAATCCTTTGGAATGAAGACTGTAGGCTATGACCCCATCATCTCTCCTGAAGTCGCCGCCTCCTTTGGTGTTCAGCAGCTGCCGCTGGAGGAGATCTGGCCTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTCTACCACAGGCTTGCTGAATGACAGCACCTTTGCTCAGTGCAAGAAAGGTGTGCGAGTAGTGAACTGTGCTCGAGGAGGCATTGTGGATGAAGGTGCCCTGCTGCGTGCCCTGCAGTCTGGTCAGTGTGCTGGGGCTGCACTGGATGTGTTTACAGAAGAGCCACCACGGGACCGGGCCTTAGTGGACCACGAGAATGTCATCAGCTGTCCCCACCTGGGTGCCAGCACCAAGGAAGCCCAGAGCCGCTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTCTAACAGGCGTTGTGAACGCCCAGGCCCTCACCAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCAATGGGCACGCTGATGCACGCCTGGGCTGGCTCCCCTAAAGGGACCATCCAGGTGGTTACACAAGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCAGTCATTGTCGGCCTTCTGAGAGAAGCATCTAAGCAGGCAGACGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCACCTCCCACAACCCTGGGGTTCCAGGGGAGCAGGGTAGCGGGGAATGCCTCCTGACTGTGGCCCTGGCAGGTGCTCCCTACCAAGCCGTGGGCTTGGTCCAGGGCACCACACCAATGCTGCAGATGCTCAacggagctgtcttcagaccagaGGTGCCACTACGCAGGGGCCAACCCCTGCTCGTATTCCGGGCTCAGCCCTCCGACCCTGGGATGCTGCCCACTATGATTGgcCTCCTGGCAGAGGCGGGTGTACAGCTGCTGTCCTACCAAACCTCCATGGTGTCTGACGGAGAGCCCTGGCACGTCATGGGCCTGTCCTCCCTGCTGCCCAGCCTGGAAACATGGAAGCAGCATGTATTGGAGGCTTTCCAGTTCTGCTTCTGACCCTGGGGTTCAGCACTCTCAGCCCCACAGGCTCTTCTGAAGAAACCCGCTCAACTGTGACCTATAGGGAGAGGGGATCGCAGAACCAGGGCATCTGCCTGAACTAATACCTAGTAAAGAATTCTTAACTCC