Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Hax1
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name HCLS1 associated X-1
Also known as HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s
Coordinate chr3:89902753-89906023
Strand -
Gene summary Predicted to enable interleukin-1 binding activity; protein N-terminus binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including positive regulation of intracellular signal transduction; positive regulation of protein phosphorylation; and regulation of actin cytoskeleton organization. Predicted to act upstream of or within cell surface receptor signaling pathway. Located in several cellular components, including actin cytoskeleton; lamellipodium; and sarcoplasmic reticulum. Is expressed in coelomic epithelium of testis; ovary; and testis mesenchyme. Human ortholog(s) of this gene implicated in severe congenital neutropenia 3. Orthologous to human HAX1 (HCLS1 associated protein X-1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Hax1

Retroname Coord Strand Genomic Region ENSG
Hax1P1 chr1:112065537-112066612 + Intergenic
ENSMUSG00000101220 UCSC
Hax1P4 chr14:101939667-101940577 - Intergenic
ENSMUSG00000115435 UCSC
Hax1P2 chr2:170126882-170127972 + Intergenic
ENSMUSG00000084013 UCSC
Hax1P3 chr9:70896979-70897351 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_011826.4
AACGCCGCACCGTAGGGTTGCTTTCCGGCAGCGAACGCTGAGCCCTGGCTATATCCGACAGGGTAGCGTAAGCTGGTCGTGGTCTCGTGTTGCCCATGGGCTGCAGAGCTTCAAAGTTTCTAGTGCCCCTACTGGAATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTTTTGGAGGGATGACTCgagatgatgacgacgatgatgatgatgatgacgaagCGGAGGAAGACAGAGGCGCGTGGGGTCGAGAGAGCTATGCGTTTGAtggttctcagcctccagagGAATTCGGTTTCAGCTTCAGCCCCAGGGGAGGGATGCGATTCCACGGCAACTTTGGCTTTGATGATCTAGTACGAGATTTTAATAGCATCTTCAGCGAGATGGGGGCCTGGACCTTGCCTTCCCACTCTCCTGAACTTCCAGGTCCTGAGTCAGAAACACCTGGTGAGAGACTGCGGGAGGGGCAGACACTACGAGACTCAATGCTTAAGTACCCAGATAGTCACCAACCCAGGATCTTTGAGGGGGTCTTGGAGAGTCATGCAAAACCTGAATCCCCAAAACCAGCTCCAGATTGGGGGTCGCAGGGACCTTTTCATAGGTTGGATGATACATGGCCTGTGAGTCCCCATTCTAGAGCCAAAGAGGACAAAGATCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTtcttcaaccccagcccaaatcGTATTTCAAAAGTATCTCTGTGACCAAGATCACTAAGCCAGATGGGACAGTGGAGGAACGCCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACAGTGACCCATCAAGAAGCCCATGACAGTTCCAGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTCCATTCTGGATTTGCTACTAGGACGTTGGTTTCGGTCCCGATAGCGTTCTTAAACAGAGGCCTTCAGGTCCTTCCCACTCCCTTCCTGTTGCCCATTGCCAATAAGCTTAGCTCTGTCTGTCATCCCAGGGTCTTAAATGTGTGAAACAATTAATTGAGCTTATGCCAGTCTGTCATTCATCCAAATTGACCAATAAAGCCTTTATTTATGCTAAAGGTCTTA