RCPedia: Genes

Summary

Gene Name	Spn	Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Rattus norvegicus
Full Name	sialophorin
Also known as	Cd43\|Lsn\|Lsn1\|gpL115
Coordinate	chr1:198572999-198585664
Strand	-
Gene summary	Enables protein domain specific binding activity. Involved in several processes, including T cell receptor signaling pathway; monocyte activation; and thymocyte aggregation. Located in cell surface; cleavage furrow; and microvillus. Orthologous to human SPN (sialophorin). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Spn

Retroname	Coord	Strand	Genomic Region	ENSG
SpnP1	chr12:18221191-18222639	-	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>NM_001271086.1
AGTCCTGACAAAGCCTCAGGAAGAACTGGAGGTACTCGCCCTGTCCGTGTGCCTTAGCCATTAAGCTGGTCCCAACTCCTGCTCCCGGCTGTCACTATGGAGATGGCCTTGCATCTTCTCCTCCTCTTTGGGGGCTTCTGGGCCCAGGTGGTGAGCCAAGAAAATCTGCCGAATACGATGACGATGTTGCCATTTACTCCGAATAGCGAGTCCCCAAGTACCTCTGAAGCCTTGAGTACCTACTCATCAATTGCTACAGTGCCAGTGACAGAGGACCCTAAGGAGAGTATCAGCCCCTGGGGGCAGACCACTGCCCCAGCTTCCTCAATCCCCTTGGGAACTCCAGAATTGTCTTCTTTTTTTTTTACATCAGCTGGTGCCAGCGGGAACACCCCAGTACCTGAGCTTACAACCTCTCAGGAAGTTTCCACCGAGGCATCATTAGTACTGTTTCCAAAATCATCAGGTGTAGCCAGTGACCCTCCTGTCACTATAACTAATCCTGCGACAAGCAGTGCTGTGGCATCTACCTCTTTAGAAACTTTTAAAGGGACCAGTGCACCTCCTGTCACTGTGACAAGCTCGACCATGACCAGTGGACCCTTTGTGGCTACAACTGTAAGCTCCGAGACCAGTGGTCCTCCAGTCACTATGGCTACTGGGTCTCTGGGGCCCTCCAAAGAGACACATGGACTCTCTGCCACCATAGCAACCAGTTCTGGTGAGAGTTCTAGTGTGGCCGGTGGCACCCCAGTCTTCAGTACAAAAATATCCACAACGTCTACCCCAAATCCCATAACCACCGTGCCACCACGCCCAGGATCGAGTGGCATGTTGCTGGTTTCCATGCTCATTGCCTTGACGGTGGTTTTGGTCCTTGTGGCGCTACTGCTGCTGTGGCGCCAGAGGCAGAAGCGGAGGACTGGGGCCCTGACCCTGAGCAGAGGTGGAAAACGAAATGGTACGGTGGATGCCTGGGCTGGGCCAGCTCGGGTTCCTGACGAAGAGGCCACCACCGCATCAGGGTCAGGGGGCAACAAGAGCTCCGGAGCGCCGGAGACGGATGGCTCCGGGCAGCGGCCCACGCTCACCACTTTCTTCAGCAGACGGAAGTCTCGCCAGGGCTCGGTAGCACTAGAAGAGCTGAAGCCTGGGACGGGTCCCAACCTGAAGGGGGAGGAAGAGCCTCTGGTAGGCAGTGAGGACGAAGCTGTGGAAACCCCAACTTCTGACGGGCCACAAGCCAAAGATGGGGCTGCACCTCAATCCCTATGAGTAACGGTATTCATCTAGTCTGCTCCTTGACCCCAGATCCTGCTGTCAGCTGCCTCTCACTCTGCATTTGTGAATATTTGTGGGCCAGGTCcattcgttcattcattattcagccattcattcCTCTCCAACCCCCGCTGTTTTCCACCTCCCCTTCCTCTGTGCTCCCTTTGAATCTCCAGAAGATAAGCTTAGTTGACCCACATTTTCCAAGCATCCCCCTTGGAATGCTGGGATCCGACAAGAAGAATGAAAATGATAAGCCAGAAAACTCCGGAGGAGGGGCCCCCTGAGGACTGCCTCTCAACTACCATTTGCTTTGGGGACAGCTTAGAGCTGGATGTAGCCATTCAGTTTGCTCTTGGGTGAACTGTGACCTGTGACTTTTCCCAGAGCACTCCGATTTTGGGCTGGCCGGTAGCTGCTTGGGGTAGCCTGCCAGAGATCAGTCACTTCTCCTGGAGGTGGGGATGGGGAGACTTCCTGGCTCCATGTGGTCCCTGCACCTGTTTTGTCCACTCGGAAGTATGGTTTATGTGCAAGATAGGACAATTTAGGCGATGGCTGTGAACAGTACTGGTGAGTATAGACCATGGAGAGAGCAGGGGAGATGCAAAAGGAGGGGCACGGGAGCTGCCGAGCCCTCAGATCCCTTCATTGTGCTCAGACAGGATATGGCTGAAAACCTAAGTTTGTCTGTAGTTCCCCAAAAGAATGCAAACATGATGGGGACTAAATGTCTCCATACTTGTGCCATCAAGAATGAGTTCTTCAGCTTAGCTGCCACAGCCTTTCCTCAAAGGCTCCCTCAGACCAGCACACACCAAGCACCCATGCAAGAAGGGGAGAAGAATCAGCCCAATGCAGGGACTGGGTGGTGCAAAACCACTGCTTTTGATGATGCTTTCCCTACAGGCTCAATTTGTCCGTTTCCTCTGAAGTCCTTCCCATCTCTGGAATAAGAAAGAGTTAAATGAAAGACAGGCTCAGGGGGTGGGACATGGATGCCCAAAGGGTCTGAGGTAGAGAGGGGACAGACCACAATTGTGCTGTTTCTGACTCTGATACCAGCCCGGCTCGTGGTCCAAAGCTGGTTGCTGGAAGAGCTGTGCAAGGGGAAGTCGTTGAGTCAGAGGACACTGTCCTTGAGAACAGCCTGACCTACAAAAAGATGTGTGTGTGCGGCTGTGTGGCCTGGGTGGAAAAGGGGAAGGTGGGTAGGAGGGAGGGGACGAGGAGTGGAAAGGGACAAGGATCAGCTGCCACCACATCATCATCTCCTCCCCAAGTCTGTGGGAAGAGGAAGGGCCAAGATGGGCACACCTGAGCCATACCGAACCCATTTCTTATAGGCGCAGTGTGGAGCAGCTCTAACAGATGGCTAGTGAGTTGCAAGTGTCCCTTAAGGAACATAACAACTGTTGTGGCTGATTTTTGCCAAACCGAATGTCCCTATTTCAGGCTTAGAGGAGAATGTTACCAAGCTGAGAGGTCAATGGCTCTACCCATCATGTTCCACTGACACTCCTGAGGTATTACAGGTTTCCAGGTACAGGGAGGAAGACAAGGAAATGGGGTAGGGATGGTGGATGGCACGCAATAGGACCTCAGCCCTGACAGACAAAATGTCACAAGAGGCTAGGACATGATTGGTATTCCACCTCCGAAGGAGGACAAGGAAGCTTAATGTTTGTCCCAGGGTCTTGGCCATATCTCTCTTTCTAGTGGCTCCAGTACCTGGCAAGCAGCAAGGACTGAGTGCATGCTCCgatggatggatggatggatggatggatggatggatggatggatgttggatggatggatggatggatgaatggacagatggatagatgAGGTATTGGCAGCTAGCAAGAGAGAAGGCATTTAACACAAAGATTAGTAATGCAAAAATATATAAGTGAGTGGAACAGAGATCATGGTGGATACACACAGCTGTCTTTCAGCTCAGGAGAGCGAGCACCCAGTAagcaatagaaaagcaaaaatagaagaagaaaaagaagaaaaaagcaggcaaacagaaacagGGAAATGTAAAACACAGAGACCGTTTGAACTCCGTCAGTTATGAAACCATAGTAAGTGGCTTGTGTTTGTGACATCCTGGCCTTGTCTTCAGAAATGTGTAATGACTTCAGAAATGCCTGCGGCTGACACGGGGTAGGGAAGTAAATGATCTGTAAATACATGTGTGTTATTGCATTTGTGATAGCAGCTACATCCTGAATGTTTAGTACGGTCCTCCTAAAGGGGAATTTAAGTGTGATTTTTTTCACCTAACTTGTCTTTGTTTTACACAATAAATGTCTTTACTTTTACAGTTATGAAAAATATTGGTGAGggggctgggaaatggctcattggttacgagcaccggttgctcttccaggggtcccaggttctattcccagcacctaagatggccgctcccaaatgtttgcaactccagttccaggagatccagtgccctgttctgaccctcaagggcacaaggtacacaggtggcacacatacatacgcacaggcaaaatatctatatgcataaaaataaaTCTTTTTAAAAATGG